Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 1.4e-108 396.4 206 100.0
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 7.9e-72 274.2 209 71.3
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 8.7e-71 270.8 207 69.1
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 1.1e-70 270.4 209 70.3
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.5e-70 270.0 213 70.9
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 3.7e-69 265.4 209 68.4
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 1.1e-68 263.8 212 69.8
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 3.1e-68 262.3 212 68.4
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 6.1e-64 248.1 207 66.7
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 1.8e-63 246.5 210 67.1
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 8.8e-63 244.2 212 67.5
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.5e-62 243.4 218 64.7
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 3.3e-62 242.3 213 66.2
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 7.4e-62 241.1 218 64.2
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 7.4e-62 241.1 218 64.2
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 9.7e-62 240.7 206 65.0
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 9.7e-62 240.7 209 65.6
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.3e-61 240.4 191 68.6
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 6.3e-61 238.0 213 64.8
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 3.1e-60 235.7 213 64.8
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 6.9e-60 234.6 199 66.8
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 1.0e-58 230.7 208 62.5
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.8e-58 228.8 211 64.5
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 6.5e-58 228.0 210 63.3
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.5e-57 226.1 211 64.0
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 3.2e-57 225.7 207 59.4
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 3.2e-57 225.7 218 62.4
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 3.2e-57 225.7 212 62.3
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 1.2e-56 223.8 208 60.6
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 3.6e-56 222.2 204 64.7
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 3.6e-56 222.2 215 59.5
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 5.2e-55 218.4 207 58.9
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.1e-54 217.2 216 61.1
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 5.7e-54 214.9 212 62.3
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 2.8e-53 212.6 213 60.6
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 6.3e-53 211.5 215 58.6
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 5.3e-52 208.4 211 56.9
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 5.3e-52 208.4 213 62.9
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.0e-50 204.1 186 62.9
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 1.1e-49 200.7 215 56.3
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.5e-49 200.3 210 57.1
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.9e-49 199.9 214 58.4
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 4.2e-49 198.7 207 58.0
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 4.2e-49 198.7 211 56.9
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 3.6e-48 195.7 213 56.3
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 1.0e-47 194.1 208 56.7
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 5.7e-46 188.3 214 52.3
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 2.2e-45 186.4 196 59.2
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 2.8e-45 186.0 215 55.8
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 6.3e-45 184.9 146 69.9
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.4e-44 183.0 211 55.5
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 7.0e-44 181.4 224 53.6
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 2.7e-43 179.5 218 54.6
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 4.5e-43 178.7 218 54.1
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 5.9e-43 178.3 211 53.6
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 7.7e-43 177.9 218 54.6
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 6.5e-42 174.9 216 52.8
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 8.5e-42 174.5 211 54.0
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 2.5e-41 172.9 217 53.5
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 3.2e-41 172.6 213 52.1
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 9.4e-41 171.0 197 54.3
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 6.1e-40 168.3 211 53.1
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 1.4e-39 167.2 266 46.2
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 1.8e-39 166.8 218 51.8
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 2.3e-39 166.4 217 52.1
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 5.2e-39 165.2 224 50.0
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 5.2e-39 165.2 217 51.6
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 5.2e-39 165.2 211 53.1
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 8.8e-39 164.5 210 51.0
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 2.0e-38 163.3 210 50.5
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 2.8e-37 159.5 211 50.7
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 2.8e-37 159.5 221 49.8
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 3.7e-37 159.1 199 52.3
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 4.8e-37 158.7 201 54.2
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 4.8e-37 158.7 124 70.2
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 8.3e-37 157.9 199 52.3
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 1.1e-36 157.5 188 54.8
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 1.4e-36 157.1 210 51.0
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.8e-36 156.8 208 49.0
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.8e-36 156.8 200 48.5
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.8e-36 156.8 217 49.8
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 2.4e-36 156.4 210 49.5
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 4.1e-36 155.6 209 51.2
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 1.2e-35 154.1 221 50.2
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 2.7e-35 152.9 212 48.6
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 2.7e-35 152.9 220 48.6
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 3.5e-35 152.5 205 50.2
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 1.3e-34 150.6 216 52.3
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 2.9e-34 149.4 221 48.4
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 3.8e-34 149.1 176 54.0
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 3.8e-34 149.1 176 54.0
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 6.5e-34 148.3 216 49.5
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 4.2e-33 145.6 221 46.6
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 5.5e-33 145.2 212 47.6
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 5.5e-33 145.2 212 47.6
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 7.2e-33 144.8 202 48.5
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.2e-32 144.1 210 47.6
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.6e-32 143.7 213 49.3
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 2.8e-32 142.9 214 49.1
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 3.6e-32 142.5 213 48.8
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 4.7e-32 142.1 211 46.4
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 1.5e-30 137.1 211 47.4
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 2.0e-30 136.7 217 47.9
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 2.6e-30 136.3 222 45.5
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 4.9e-29 132.1 219 40.6
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 8.3e-29 131.3 201 47.8
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 1.8e-28 130.2 102 67.6
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 2.4e-28 129.8 217 44.7
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 3.1e-28 129.4 203 46.8
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 4.1e-28 129.0 219 39.7
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 2.7e-27 126.3 171 52.0
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 7.8e-27 124.8 210 43.8
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 7.8e-27 124.8 209 42.6
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.9e-26 122.9 128 55.5
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 5.6e-25 118.6 87 69.0
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 9.8e-22 107.8 174 43.7
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 1.3e-21 107.5 187 44.9
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 1.7e-21 107.1 216 41.7
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 9.2e-20 101.3 178 40.4
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 2.0e-19 100.1 179 45.8
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 6.0e-19 98.6 179 45.3
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 6.0e-19 98.6 179 45.3
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 1.0e-18 97.8 215 42.3
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 5.0e-18 95.5 79 64.6
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 5.0e-18 95.5 79 64.6
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 3.6e-16 89.4 108 52.8
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 1.4e-15 87.4 187 38.5
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 4.0e-15 85.9 181 38.1
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 4.9e-13 79.0 201 37.3
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 3.5e-11 72.8 179 35.2
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 4.6e-11 72.4 74 58.1
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 3.0e-10 69.7 189 35.4
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 3.0e-10 69.7 74 55.4
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 3.9e-10 69.3 209 31.6
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 2.5e-09 66.6 90 50.0
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 9.5e-09 64.7 121 44.6
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 9.5e-09 64.7 121 44.6
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 1.2e-08 64.3 114 45.6
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 1.2e-08 64.3 114 45.6
ECA238G3056 Erigeron canadensis HOM05D002204 ORTHO05D002875 2.1e-08 63.5 101 43.6


User provided reference genes

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