Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 6.2e-107 391.0 219 100.0
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 8.8e-45 184.5 207 57.0
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 3.4e-41 172.6 221 48.4
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 3.4e-41 172.6 217 50.2
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.0e-40 171.0 214 49.5
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 3.2e-39 166.0 223 46.6
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 4.7e-38 162.2 195 51.3
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 1.8e-37 160.2 216 46.8
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.2e-37 158.7 208 49.0
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 8.8e-37 157.9 234 54.7
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.5e-36 157.1 204 53.4
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 3.3e-36 156.0 208 46.2
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.4e-36 155.6 207 47.8
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 2.2e-35 153.3 210 48.1
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.8e-35 152.9 207 47.3
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 2.8e-35 152.9 210 48.6
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 4.1e-34 149.1 208 53.8
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 4.5e-33 145.6 219 47.9
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.8e-32 142.5 211 45.5
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 8.5e-32 141.4 188 52.1
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.1e-31 141.0 212 46.2
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.2e-31 139.0 206 47.6
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 5.5e-31 138.7 176 47.7
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.6e-30 137.1 199 54.3
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.6e-30 137.1 213 44.6
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.7e-30 136.3 193 49.2
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 4.7e-30 135.6 202 43.1
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 8.0e-30 134.8 229 51.5
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.3e-29 133.3 188 49.5
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.0e-29 132.9 190 45.8
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-28 131.0 209 44.5
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 1.5e-28 130.6 175 48.6
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 2.6e-28 129.8 221 41.2
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 7.5e-28 128.3 191 44.5
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 1.7e-27 127.1 137 54.7
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 2.2e-27 126.7 218 45.0
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 6.3e-27 125.2 204 44.6
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 6.3e-27 125.2 138 53.6
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 8.2e-27 124.8 214 42.1
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 5.3e-26 122.1 202 40.1
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 5.3e-26 122.1 229 38.0
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 7.0e-26 121.7 171 52.0
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 9.1e-26 121.3 215 43.7
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.2e-25 120.9 175 48.0
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.6e-25 120.6 201 42.3
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 3.5e-25 119.4 222 49.1
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 5.9e-25 118.6 203 43.8
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 7.7e-25 118.2 177 45.2
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 7.7e-25 118.2 168 47.6
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.2e-24 116.7 215 39.5
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.2e-24 116.7 190 45.8
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.9e-24 116.3 227 38.8
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 5.0e-24 115.5 175 44.6
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.1e-23 114.4 226 39.8
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.1e-23 114.4 169 45.6
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.1e-23 114.4 226 39.8
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.1e-23 114.4 226 39.8
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.1e-23 114.4 169 45.6
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.9e-23 113.6 163 44.8
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 2.5e-23 113.2 225 40.9
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 5.5e-23 112.1 229 47.6
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 7.2e-23 111.7 156 48.1
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 9.4e-23 111.3 226 38.5
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 9.4e-23 111.3 175 51.4
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.2e-22 110.9 208 38.9
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.6e-22 110.5 173 43.4
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.1e-22 110.2 169 43.8
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 2.7e-22 109.8 214 37.9
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 3.6e-22 109.4 173 45.1
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.6e-22 109.4 147 46.9
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 4.7e-22 109.0 161 44.1
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 6.1e-22 108.6 180 42.8
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 6.1e-22 108.6 176 42.6
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.0e-21 107.8 145 44.1
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.0e-21 107.8 177 44.6
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.0e-21 107.8 177 44.6
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.0e-21 107.8 151 44.4
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.8e-21 107.1 184 43.5
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.8e-21 107.1 227 48.0
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 3.0e-21 106.3 149 45.6
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.8e-21 105.1 189 40.2
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.5e-20 104.0 235 43.4
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 1.5e-20 104.0 180 44.4
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.5e-20 104.0 173 43.9
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.5e-20 104.0 172 39.5
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.5e-20 104.0 149 45.0
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 2.6e-20 103.2 163 42.9
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 3.4e-20 102.8 181 43.6
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 3.4e-20 102.8 193 41.5
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 3.4e-20 102.8 142 43.0
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 4.4e-20 102.4 232 41.8
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 4.4e-20 102.4 188 38.3
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.7e-20 102.1 189 40.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 7.5e-20 101.7 208 47.6
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 9.8e-20 101.3 225 46.7
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-19 100.5 225 46.2
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.8e-19 99.8 188 40.4
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.7e-19 99.4 177 39.5
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.1e-18 97.8 161 41.6
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.1e-18 97.8 216 35.6
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.8e-18 97.1 149 43.6
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 3.1e-18 96.3 172 41.9
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 9.1e-18 94.7 151 41.1
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.7e-17 93.2 209 38.3
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.5e-17 92.8 179 38.0
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 5.9e-17 92.0 172 43.0
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 7.7e-17 91.7 145 39.3
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 1.3e-16 90.9 170 41.8
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.7e-16 90.5 193 38.9
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.7e-16 90.5 145 40.7
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.2e-16 90.1 208 37.5
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.2e-16 90.1 136 39.7
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 2.9e-16 89.7 162 40.7
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.9e-16 89.7 218 36.2
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 5.0e-16 89.0 161 41.0
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 1.1e-15 87.8 162 38.9
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 1.9e-15 87.0 153 45.1
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 2.5e-15 86.7 158 43.0
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.2e-15 86.3 199 39.7
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 4.2e-15 85.9 206 37.9
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 5.5e-15 85.5 146 41.1
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 9.5e-15 84.7 149 40.3
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.2e-14 84.3 190 36.3
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.6e-14 84.0 138 44.9
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 2.1e-14 83.6 197 36.0
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 2.1e-14 83.6 176 37.5
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 6.1e-14 82.0 140 43.6
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.8e-13 80.5 174 38.5
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 5.2e-13 79.0 157 37.6
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.3e-11 74.3 99 47.5
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.2e-11 73.6 97 45.4
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 6.3e-11 72.0 202 30.2
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 8.3e-11 71.6 150 36.0
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.0e-09 67.0 156 33.3
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 2.0e-09 67.0 102 48.0
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 2.7e-09 66.6 193 39.9
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.7e-08 63.9 205 32.7
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.3e-08 63.5 157 32.5
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 2.9e-08 63.2 157 34.4
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.1e-07 61.2 145 35.9
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.6e-06 57.4 178 38.8


User provided reference genes

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