Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 5.8e-113 411.0 220 100.0
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 9.7e-52 207.6 251 55.4
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 4.5e-49 198.7 253 53.8
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 2.3e-45 186.4 249 53.0
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 4.0e-45 185.7 254 51.2
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 4.8e-43 178.7 241 51.0
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 4.1e-42 175.6 230 50.9
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 1.6e-41 173.7 265 48.7
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.6e-41 173.7 259 49.8
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 3.5e-41 172.6 234 49.6
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.3e-40 170.6 253 48.6
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 2.2e-40 169.9 268 45.9
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.6e-38 163.7 237 52.3
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 4.7e-38 162.2 270 45.2
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 8.0e-38 161.4 237 51.9
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 1.0e-37 161.0 246 47.6
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 1.4e-37 160.6 267 44.6
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 1.8e-37 160.2 258 48.8
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 5.2e-37 158.7 217 52.1
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 2.0e-36 156.8 235 51.1
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 2.6e-36 156.4 258 45.3
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 5.7e-36 155.2 238 42.4
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 8.3e-35 151.4 156 62.8
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 7.0e-34 148.3 235 40.9
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 1.2e-33 147.5 265 43.8
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 1.6e-33 147.1 236 44.5
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.7e-33 144.8 249 45.8
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 6.5e-32 141.7 282 42.6
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 2.5e-31 139.8 245 42.4
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.2e-31 138.3 249 45.4
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 7.2e-31 138.3 249 45.4
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 7.2e-31 138.3 245 43.3
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 1.8e-29 133.7 255 42.4
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 2.3e-29 133.3 216 47.7
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 3.0e-29 132.9 216 48.6
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 4.0e-29 132.5 229 42.4
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 6.8e-29 131.7 168 53.0
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 6.8e-29 131.7 219 45.7
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 2.6e-28 129.8 217 44.2
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 5.7e-28 128.6 216 47.7
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 3.7e-27 125.9 217 47.0
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 6.3e-27 125.2 155 50.3
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 3.5e-25 119.4 233 41.2
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 4.5e-25 119.0 229 41.0
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 5.9e-25 118.6 235 41.7
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 8.6e-24 114.8 193 48.2
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 3.3e-23 112.8 275 38.5
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 3.3e-23 112.8 197 45.2
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 7.3e-23 111.7 230 43.0
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.2e-22 110.9 217 43.8
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 3.6e-22 109.4 133 51.9
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.0e-21 107.8 220 39.5
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.4e-21 107.5 232 38.4
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.8e-21 107.1 235 39.1
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 1.8e-21 107.1 151 53.0
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 1.8e-21 107.1 224 43.3
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 3.0e-21 106.3 248 34.3
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 4.0e-21 105.9 217 42.4
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 1.5e-20 104.0 229 38.4
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.6e-20 103.2 234 37.6
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 7.5e-20 101.7 220 42.3
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 1.3e-19 100.9 245 38.8
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 1.7e-19 100.5 259 37.8
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 2.9e-19 99.8 231 41.1
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 3.7e-19 99.4 214 42.1
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 8.3e-19 98.2 233 39.5
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 1.2e-17 94.4 238 38.7
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 1.6e-17 94.0 121 50.4
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 2.7e-17 93.2 96 55.2
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 4.6e-17 92.4 124 53.2
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 2.5e-15 86.7 236 38.1
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 2.5e-15 86.7 154 43.5
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 9.5e-15 84.7 131 50.4
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 1.2e-14 84.3 212 35.4
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 8.0e-14 81.6 225 36.9
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 1.4e-13 80.9 176 42.0
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 1.8e-13 80.5 160 40.6
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.3e-13 80.1 64 67.2
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.3e-11 74.3 127 43.3
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 1.7e-11 73.9 82 54.9
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 6.4e-11 72.0 152 41.4
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 4.1e-10 69.3 175 33.7
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 7.0e-10 68.6 223 31.8
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 7.0e-10 68.6 223 31.8
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 7.0e-10 68.6 223 31.8
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 7.0e-10 68.6 186 36.6
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 2.7e-09 66.6 56 60.7
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 3.5e-09 66.2 235 30.6
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 6.0e-09 65.5 226 31.9
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 7.8e-09 65.1 223 31.4
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 1.3e-08 64.3 49 57.1
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 1.3e-08 64.3 231 29.0
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 1.7e-08 63.9 49 63.3
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 1.7e-08 63.9 236 29.7
Ah.11g039950 Amaranthus hybridus HOM05D047386 ORTHO05D008483 2.3e-08 63.5 111 44.1
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 2.3e-08 63.5 235 30.2
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 3.9e-08 62.8 235 29.8
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 1.1e-07 61.2 143 40.6
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 1.9e-07 60.5 226 30.1
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.6e-07 58.9 85 42.4
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.6e-07 58.9 85 42.4
Atru.chr13.259 Acer truncatum HOM05D007731 ORTHO05D008483 7.3e-07 58.5 107 43.9
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 7.3e-07 58.5 229 29.7
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 7.3e-07 58.5 125 41.6
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 1.2e-06 57.8 231 29.9
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 1.2e-06 57.8 230 30.9
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 1.6e-06 57.4 236 30.5
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 1.6e-06 57.4 90 40.0
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.8e-06 56.6 85 40.0
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 4.7e-06 55.8 92 41.3
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 4.7e-06 55.8 94 38.3
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 6.2e-06 55.5 86 40.7
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 8.1e-06 55.1 105 37.1
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 8.1e-06 55.1 150 32.0


User provided reference genes

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