Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 4.2e-122 441.4 231 100.0
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 6.3e-86 321.2 219 75.3
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 1.4e-85 320.1 224 75.0
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 3.1e-85 318.9 220 73.2
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 4.1e-85 318.5 219 74.9
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 9.1e-85 317.4 220 74.5
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.0e-83 313.9 219 74.9
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 2.9e-83 312.4 218 72.0
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 3.8e-83 312.0 216 74.5
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 1.5e-82 310.1 218 74.8
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 4.2e-82 308.5 217 73.3
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 9.5e-82 307.4 220 70.5
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 2.1e-81 306.2 220 72.3
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 2.1e-81 306.2 219 71.2
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 1.4e-80 303.5 220 71.4
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 5.2e-80 301.6 220 72.7
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 5.2e-80 301.6 197 76.1
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 6.8e-80 301.2 219 71.2
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 8.9e-80 300.8 219 71.7
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 8.9e-80 300.8 242 66.1
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 1.2e-79 300.4 205 74.1
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 1.2e-79 300.4 226 69.0
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.5e-79 300.1 215 72.1
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 1.5e-79 300.1 216 71.8
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 2.6e-79 299.3 209 71.8
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 5.7e-79 298.1 218 71.6
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 7.5e-79 297.7 246 66.7
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 9.8e-79 297.4 218 70.6
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 1.3e-78 297.0 215 69.8
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 3.7e-78 295.4 215 69.8
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 6.3e-78 294.7 220 70.5
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 8.3e-78 294.3 218 68.8
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.1e-77 293.9 216 71.3
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 1.8e-77 293.1 222 67.1
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 2.4e-77 292.7 222 68.9
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 3.1e-77 292.4 220 69.5
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 4.1e-77 292.0 216 71.8
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 5.4e-77 291.6 216 69.0
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 7.0e-77 291.2 220 70.5
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 1.2e-76 290.4 216 69.9
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 2.0e-76 289.7 226 66.8
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 2.7e-76 289.3 216 69.4
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 2.7e-76 289.3 215 68.4
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.0e-75 287.3 222 68.9
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 1.3e-75 287.0 222 68.9
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 1.3e-75 287.0 218 67.0
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 2.3e-75 286.2 221 68.3
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 3.8e-75 285.4 220 68.6
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 5.0e-75 285.0 217 67.7
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 6.6e-75 284.6 220 68.2
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 8.6e-75 284.3 208 69.7
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 1.5e-74 283.5 208 69.2
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 1.5e-74 283.5 202 71.8
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 1.9e-74 283.1 217 67.7
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 5.6e-74 281.6 222 66.7
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 7.3e-74 281.2 206 68.9
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 2.1e-73 279.6 218 66.1
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 2.8e-73 279.3 218 68.8
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 8.0e-73 277.7 216 65.7
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.2e-71 273.9 217 66.8
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 2.6e-71 272.7 222 66.2
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 9.8e-71 270.8 221 67.4
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 9.8e-71 270.8 223 63.7
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.2e-70 269.6 216 64.4
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 2.4e-69 266.2 218 61.5
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 5.4e-69 265.0 214 64.5
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 7.0e-69 264.6 207 67.1
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 1.6e-68 263.5 167 78.4
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 2.0e-68 263.1 220 65.0
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 2.0e-68 263.1 169 76.3
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 2.7e-68 262.7 219 64.8
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 3.5e-68 262.3 217 63.1
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 1.7e-67 260.0 195 68.7
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 3.0e-67 259.2 167 75.4
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 1.1e-66 257.3 183 70.5
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 1.2e-65 253.8 167 74.9
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 3.1e-64 249.2 171 71.3
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.2e-63 247.3 215 61.9
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.2e-63 247.3 216 61.6
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 5.8e-63 245.0 232 58.2
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 1.7e-62 243.4 169 69.8
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 8.3e-62 241.1 155 77.4
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 6.2e-57 224.9 140 76.4
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 2.3e-56 223.0 215 55.8
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 8.9e-56 221.1 219 54.3
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 8.3e-54 214.5 156 73.7
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.7e-51 206.8 226 52.2
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 6.6e-51 204.9 140 70.0
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.6e-47 193.0 158 70.3
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 3.0e-43 179.5 215 48.8
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 5.1e-43 178.7 141 64.5
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 8.1e-41 171.4 147 68.7
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 1.1e-40 171.0 147 68.0
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 3.0e-27 126.3 95 72.6
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.2e-23 114.4 80 76.2
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.2e-23 114.4 80 76.2
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 8.7e-19 98.2 71 71.8
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 2.5e-18 96.7 59 78.0
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 4.3e-18 95.9 215 35.8
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 5.3e-16 89.0 77 63.6
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 1.3e-14 84.3 157 39.5
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 1.1e-13 81.3 73 42.5
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 3.9e-11 72.8 184 33.7
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.9e-07 58.9 42 71.4


User provided reference genes

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