Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 2.2e-123 445.7 232 100.0
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 2.0e-87 326.2 229 77.3
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 5.8e-79 298.1 242 67.8
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 1.7e-78 296.6 238 67.2
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 1.1e-77 293.9 238 69.3
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 1.6e-76 290.0 238 66.4
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 2.7e-76 289.3 246 67.1
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 2.7e-76 289.3 233 70.4
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 3.5e-76 288.9 241 67.6
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 1.3e-75 287.0 243 67.1
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 3.9e-75 285.4 238 66.4
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 1.5e-74 283.5 235 67.2
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 4.3e-74 282.0 235 67.2
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 5.6e-74 281.6 235 66.8
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 5.6e-74 281.6 245 65.7
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.1e-73 279.6 233 64.8
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 4.7e-73 278.5 229 67.7
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 4.7e-73 278.5 239 65.7
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 6.2e-73 278.1 223 65.5
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.1e-72 277.3 238 63.4
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 1.8e-72 276.6 237 63.3
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 3.1e-72 275.8 236 64.8
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 4.0e-72 275.4 227 65.2
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 8.9e-72 274.2 236 65.3
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 8.9e-72 274.2 231 66.2
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 1.2e-71 273.9 231 66.7
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 1.5e-71 273.5 251 62.9
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 1.5e-71 273.5 225 65.8
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 2.0e-71 273.1 234 66.7
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 3.4e-71 272.3 242 61.6
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.4e-71 271.9 218 65.6
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 4.4e-71 271.9 229 65.1
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 1.7e-70 270.0 238 65.1
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 1.7e-70 270.0 238 63.0
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 2.2e-70 269.6 242 62.8
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 2.9e-70 269.2 241 63.9
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 3.7e-70 268.9 231 64.9
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 8.3e-70 267.7 223 65.0
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 1.1e-69 267.3 227 65.6
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.4e-69 266.9 281 54.4
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 7.1e-69 264.6 227 65.6
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 1.6e-68 263.5 229 64.2
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 6.0e-68 261.5 155 84.5
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 7.8e-68 261.2 229 63.8
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 1.0e-67 260.8 232 65.9
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 1.0e-67 260.8 251 59.8
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 1.3e-67 260.4 156 83.3
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 6.6e-67 258.1 226 65.0
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 3.3e-66 255.8 241 60.6
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 9.5e-66 254.2 155 81.9
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 3.6e-65 252.3 193 71.0
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 1.4e-64 250.4 235 61.7
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 1.2e-63 247.3 190 70.5
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 1.3e-62 243.8 252 58.3
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 1.3e-62 243.8 195 70.3
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 2.2e-62 243.0 196 68.9
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 8.4e-62 241.1 193 65.8
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 3.2e-61 239.2 210 65.7
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 2.1e-57 226.5 156 72.4
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 1.9e-53 213.4 216 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 6.2e-49 198.4 234 50.0
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 8.1e-49 198.0 155 62.6
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 1.0e-43 181.0 144 63.2
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 3.9e-43 179.1 96 90.6
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 1.2e-39 167.5 239 47.3
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 8.7e-35 151.4 190 50.0
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 2.0e-31 140.2 89 79.8
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.0e-27 127.9 169 46.7
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.3e-27 127.5 135 51.9
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 6.1e-20 102.1 143 38.5
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 1.2e-15 87.8 133 48.1
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 2.0e-15 87.0 48 87.5
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 2.6e-15 86.7 46 91.3
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 2.6e-15 86.7 48 85.4
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 7.7e-15 85.1 46 89.1
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 2.9e-14 83.2 78 62.8
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 2.5e-13 80.1 46 84.8
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 3.2e-13 79.7 58 70.7
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 6.1e-12 75.5 46 82.6
Mapoly0178s0020 Marchantia polymorpha HOM05D019817 ORTHO05D016515 2.2e-06 57.0 92 35.9
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.9e-06 56.6 29 93.1
Pp3c2_6800 Physcomitrium patens HOM05D019817 ORTHO05D016515 5.0e-06 55.8 207 24.6
PRCOL_00005335 Prasinoderma coloniale HOM05D016266 ORTHO05D019595 5.0e-06 55.8 94 29.8
SEGI_14611 Sequoiadendron giganteum HOM05D019817 ORTHO05D016515 6.5e-06 55.5 94 33.0


User provided reference genes

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