Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 7.0e-125 450.7 234 100.0
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 4.0e-96 355.1 234 77.8
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.3e-86 323.6 232 71.6
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 7.8e-84 314.3 231 71.9
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 4.8e-81 305.1 232 69.0
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.4e-80 303.5 234 68.8
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.1e-80 302.4 232 68.1
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 3.1e-80 302.4 233 70.8
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.8e-79 298.1 225 69.8
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 9.9e-79 297.4 232 67.2
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.7e-78 296.6 231 67.1
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 2.2e-78 296.2 235 67.2
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 2.9e-78 295.8 228 64.5
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.9e-78 295.8 232 69.4
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 3.8e-78 295.4 231 68.4
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 6.4e-78 294.7 234 66.7
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 6.4e-78 294.7 232 67.2
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.9e-77 293.1 201 76.1
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.9e-77 293.1 231 68.0
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.4e-77 292.7 229 67.2
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.4e-77 292.7 231 68.0
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.4e-77 292.7 231 68.0
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-76 290.4 231 67.5
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.1e-76 289.7 210 71.4
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.7e-76 289.3 234 66.2
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.7e-76 289.3 228 65.4
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 6.0e-76 288.1 231 65.8
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.0e-75 287.3 210 70.0
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.3e-75 287.0 231 67.5
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.3e-75 287.0 232 62.5
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.3e-75 286.2 232 62.9
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 8.7e-75 284.3 197 71.6
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.1e-74 283.9 232 65.1
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.5e-74 283.5 232 65.1
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.5e-74 282.7 211 70.1
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.4e-74 281.2 234 63.2
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 2.1e-73 279.6 229 63.3
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.8e-73 279.3 227 61.2
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 4.8e-73 278.5 232 61.6
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 4.0e-72 275.4 235 63.4
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.3e-72 275.0 231 65.8
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 9.0e-72 274.2 234 61.1
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.6e-71 272.7 228 64.9
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.6e-71 272.7 234 61.1
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.7e-70 270.0 232 61.6
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.2e-70 269.6 233 61.8
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 2.2e-70 269.6 232 62.9
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.9e-70 269.2 234 61.5
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 3.8e-70 268.9 232 61.2
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 4.9e-70 268.5 234 61.5
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 6.4e-70 268.1 230 60.9
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 8.4e-70 267.7 234 60.3
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 8.4e-70 267.7 227 60.4
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.4e-69 266.9 233 61.8
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.4e-69 266.9 232 63.4
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.9e-69 266.5 189 70.4
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 3.2e-69 265.8 233 60.5
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 3.5e-68 262.3 228 59.2
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 2.3e-67 259.6 230 57.8
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 2.3e-67 259.6 230 59.1
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 6.7e-67 258.1 226 58.8
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.9e-66 256.5 200 68.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 7.4e-66 254.6 195 63.6
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 7.4e-66 254.6 233 59.2
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.6e-65 253.4 242 56.6
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 3.7e-65 252.3 227 58.1
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 6.2e-65 251.5 227 56.8
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 6.2e-65 251.5 251 59.0
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.1e-64 250.8 227 61.2
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.1e-64 250.8 229 60.3
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.8e-64 250.0 224 59.4
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.3e-64 248.4 196 66.3
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.5e-63 246.9 192 65.1
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.5e-63 246.9 230 57.4
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 2.0e-63 246.5 228 56.6
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.6e-63 246.1 230 55.7
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 4.5e-63 245.4 196 59.7
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 4.5e-63 245.4 224 57.1
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 7.6e-63 244.6 194 60.3
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.0e-62 244.2 244 56.6
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.3e-62 243.8 196 59.2
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.3e-62 243.8 196 59.2
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.3e-62 243.8 244 56.6
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-62 243.4 244 56.6
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 3.8e-62 242.3 194 58.8
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 4.9e-62 241.9 232 54.7
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.1e-61 240.7 187 61.0
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.1e-61 240.7 178 66.3
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.4e-61 240.4 194 58.2
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 1.4e-61 240.4 232 57.8
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.9e-61 240.0 194 58.8
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.9e-61 240.0 235 55.3
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 2.5e-61 239.6 194 57.7
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.5e-61 239.6 229 57.6
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 5.5e-61 238.4 194 57.2
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 9.3e-61 237.7 187 59.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 9.3e-61 237.7 228 54.8
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 4.6e-60 235.3 230 57.0
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 2.3e-59 233.0 228 53.9
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 8.7e-59 231.1 197 56.9
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 8.7e-59 231.1 262 51.9
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.9e-58 229.9 228 53.1
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 3.3e-58 229.2 199 57.3
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.3e-57 227.3 199 57.3
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.3e-57 227.3 228 53.1
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.6e-57 226.9 187 63.1
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 2.1e-57 226.5 230 54.8
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.1e-57 226.5 152 75.0
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 4.8e-57 225.3 248 52.0
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 4.8e-57 225.3 228 51.8
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.8e-56 223.4 249 49.4
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 6.9e-56 221.5 227 52.9
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 5.0e-54 215.3 232 53.0
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.9e-53 213.4 257 46.3
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.3e-51 206.5 142 72.5
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 4.1e-48 195.7 160 59.4
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.4e-47 192.6 160 60.6
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 8.5e-46 188.0 184 52.7
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.4e-45 187.2 184 52.7
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.4e-45 187.2 122 76.2
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 7.2e-45 184.9 236 46.6
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 4.6e-44 182.2 311 41.8
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 3.0e-43 179.5 226 46.9
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 3.0e-43 179.5 186 51.1
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.6e-42 176.4 235 45.1
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 8.5e-38 161.4 235 41.3
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 2.3e-35 153.3 258 37.6
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.3e-34 149.4 134 57.5
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.4e-34 149.1 154 50.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.3e-33 147.5 200 43.5
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.9e-29 133.7 188 41.5
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 2.5e-29 133.3 229 39.3
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.1e-28 130.2 209 38.3
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 4.7e-28 129.0 135 54.1
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 6.1e-28 128.6 203 38.4
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.7e-23 113.2 76 76.3
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.8e-22 109.4 116 49.1
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.0e-19 101.3 88 59.1
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.1e-16 91.3 99 47.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 2.9e-14 83.2 71 56.3
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.4e-10 69.3 77 49.4
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.8e-10 68.2 77 48.1
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.8e-09 66.6 177 28.8
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 1.1e-08 64.7 142 32.4
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 3.1e-08 63.2 36 83.3
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 5.9e-07 58.9 51 64.7


User provided reference genes

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