Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.3e-128 462.2 236 100.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 8.4e-94 347.4 236 71.2
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 1.1e-93 347.1 236 71.6
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 4.2e-93 345.1 233 70.0
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.2e-92 343.6 236 70.3
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.2e-92 343.6 233 70.8
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.6e-92 343.2 233 71.2
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.7e-92 342.4 233 70.4
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.5e-92 342.0 236 69.5
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.8e-91 339.7 233 69.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 2.3e-91 339.3 236 69.5
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 3.9e-91 338.6 236 68.6
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.1e-90 337.0 236 66.5
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.5e-90 336.7 236 68.6
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.5e-90 336.7 236 68.6
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.5e-90 336.7 236 69.5
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 9.6e-90 334.0 236 69.9
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 9.6e-90 334.0 234 67.1
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 8.2e-89 330.9 236 68.6
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 8.2e-89 330.9 233 67.0
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 1.1e-88 330.5 233 66.5
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.1e-88 330.5 233 67.8
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.4e-88 330.1 233 67.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.4e-88 329.3 236 68.6
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 5.3e-88 328.2 236 67.4
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 6.9e-88 327.8 233 69.1
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.5e-87 326.6 233 67.4
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 2.6e-87 325.9 236 65.3
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 3.4e-87 325.5 240 65.8
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 3.4e-87 325.5 234 67.9
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 4.5e-87 325.1 236 66.9
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 4.5e-87 325.1 236 64.8
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 5.8e-87 324.7 236 65.3
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.0e-86 323.9 237 67.5
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 1.0e-86 323.9 236 64.8
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.7e-86 323.2 260 61.5
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.7e-86 323.2 236 65.7
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.7e-86 323.2 236 65.7
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 2.9e-86 322.4 236 67.4
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.9e-86 322.4 233 66.1
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 6.5e-86 321.2 233 65.7
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 8.4e-86 320.9 233 65.7
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 8.4e-86 320.9 234 66.2
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.1e-85 320.5 233 64.8
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 1.1e-85 320.5 236 64.8
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 3.2e-85 318.9 231 65.4
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 3.2e-85 318.9 279 58.4
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 4.2e-85 318.5 233 64.8
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 7.1e-85 317.8 238 66.4
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 9.3e-85 317.4 233 64.8
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 9.3e-85 317.4 233 64.4
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 9.3e-85 317.4 236 65.7
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-84 317.0 233 63.9
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.2e-84 317.0 233 63.9
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.2e-84 317.0 236 66.9
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.6e-84 316.6 236 64.0
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.6e-84 316.6 236 64.0
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 6.1e-84 314.7 233 62.7
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 1.0e-83 313.9 236 64.4
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.3e-83 312.8 234 64.5
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 3.9e-83 312.0 272 58.1
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 3.9e-83 312.0 236 64.8
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.3e-82 308.9 233 62.2
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 5.7e-82 308.1 238 65.1
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 5.7e-82 308.1 232 63.4
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.3e-81 307.0 234 62.4
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.6e-81 306.6 233 62.2
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 2.8e-81 305.8 238 65.1
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 4.8e-81 305.1 238 63.4
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 6.3e-81 304.7 237 60.8
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.4e-80 303.5 236 62.3
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 5.3e-80 301.6 206 68.0
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.4e-79 298.9 228 63.2
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.7e-78 296.6 233 63.9
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.9e-78 295.8 205 70.7
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 2.9e-78 295.8 224 63.8
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.4e-77 293.5 238 62.6
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 3.2e-77 292.4 210 69.5
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 5.5e-77 291.6 234 59.4
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.5e-77 291.6 235 57.4
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 9.4e-77 290.8 303 50.5
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.1e-76 289.7 204 68.1
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.7e-76 289.3 204 68.6
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.6e-76 288.9 214 65.9
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 6.1e-76 288.1 199 69.3
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.4e-75 287.0 230 62.6
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 6.7e-75 284.6 206 66.0
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 2.0e-74 283.1 264 56.1
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 2.5e-74 282.7 203 67.0
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 9.7e-74 280.8 236 56.8
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.7e-73 280.0 230 56.5
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 3.7e-73 278.9 230 56.1
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 3.7e-73 278.9 196 67.9
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-72 277.3 230 55.2
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.1e-72 277.3 230 55.2
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 2.4e-72 276.2 230 54.8
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.4e-72 276.2 236 58.9
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.1e-72 275.8 239 59.0
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 9.1e-72 274.2 234 60.7
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 9.1e-72 274.2 234 60.7
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 9.1e-72 274.2 235 54.5
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 4.5e-71 271.9 199 64.8
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.3e-70 270.4 187 67.9
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.2e-69 265.8 235 54.5
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.4e-67 260.4 228 58.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.3e-67 259.6 221 59.7
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.3e-65 253.8 231 51.9
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.8e-65 252.7 211 58.8
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 6.3e-65 251.5 225 55.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.8e-64 250.0 190 63.7
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.0e-63 246.5 210 60.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.0e-62 241.9 185 61.1
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 8.5e-62 241.1 239 50.2
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.2e-61 239.2 238 49.6
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 4.2e-61 238.8 167 68.3
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.2e-60 237.3 166 67.5
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 5.7e-58 228.4 166 69.3
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.3e-57 227.3 218 51.8
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.7e-57 226.9 223 50.7
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.2e-57 226.5 233 52.4
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.6e-55 220.3 238 51.3
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.9e-54 216.1 151 68.9
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 5.2e-51 205.3 147 63.9
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.1e-48 195.7 204 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.3e-46 190.7 173 52.0
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.4e-42 175.6 135 60.7
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.3e-41 174.1 135 60.7
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.1e-40 171.0 126 65.9
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 5.0e-38 162.2 112 68.8
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.9e-37 160.2 236 40.7
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 4.3e-37 159.1 236 39.8
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.5e-34 150.6 134 50.7
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.1e-32 144.4 104 67.3
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 7.0e-32 141.7 101 64.4
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 3.5e-31 139.4 210 36.7
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.7e-30 137.1 102 62.7
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 3.9e-30 136.0 100 63.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 7.3e-29 131.7 111 59.5
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.6e-26 123.2 76 69.7
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 8.3e-25 118.2 211 32.7
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 5.4e-24 115.5 263 31.6
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.6e-23 114.0 227 33.0
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.6e-23 114.0 227 33.0
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 4.4e-18 95.9 74 62.2
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 5.8e-18 95.5 68 67.6
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.4e-16 90.1 204 31.4
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.5e-13 80.1 49 73.5
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 9.5e-13 78.2 80 51.2
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 3.6e-12 76.3 106 40.6
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.1e-11 74.7 53 64.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 5.2e-11 72.4 49 63.3
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.7e-09 67.4 44 70.5
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 2.2e-09 67.0 53 54.7
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 1.1e-08 64.7 52 55.8
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 2.4e-08 63.5 50 52.0
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.6e-07 60.8 51 58.8


User provided reference genes

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