Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 7.9e-132 473.8 240 100.0
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 5.2e-99 364.8 236 76.3
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 2.6e-98 362.5 236 75.0
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 1.8e-96 356.3 235 74.9
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 1.8e-96 356.3 236 74.2
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 3.1e-96 355.5 236 75.0
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 3.5e-95 352.1 236 73.3
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 3.5e-95 352.1 235 75.3
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 4.5e-95 351.7 236 73.7
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 7.8e-95 350.9 235 75.3
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 1.0e-94 350.5 236 74.6
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 1.3e-94 350.1 234 74.4
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 3.8e-94 348.6 236 72.9
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 3.8e-94 348.6 235 74.5
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 5.0e-94 348.2 236 73.3
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 8.6e-94 347.4 239 72.0
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 1.1e-93 347.1 226 74.3
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 1.1e-93 347.1 236 73.3
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 9.5e-93 344.0 234 71.4
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 3.6e-92 342.0 230 72.6
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 6.1e-92 341.3 236 71.2
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 1.0e-91 340.5 226 73.9
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 3.0e-91 339.0 236 71.6
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 6.8e-91 337.8 253 68.0
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 1.5e-90 336.7 239 69.9
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 4.4e-90 335.1 226 72.6
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 5.7e-90 334.7 228 72.4
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 2.2e-89 332.8 237 70.0
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 2.2e-89 332.8 233 70.8
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 6.4e-89 331.3 225 72.0
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 7.0e-88 327.8 235 70.2
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 1.2e-87 327.0 224 71.4
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 1.2e-87 327.0 227 69.2
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 2.0e-87 326.2 224 70.1
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 2.7e-87 325.9 235 70.2
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 3.5e-87 325.5 237 67.5
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 3.5e-87 325.5 234 68.8
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 4.6e-87 325.1 226 70.4
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 5.9e-87 324.7 222 72.5
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 7.8e-87 324.3 239 67.4
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 1.0e-86 323.9 214 74.8
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 3.9e-86 322.0 237 66.2
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 6.6e-86 321.2 236 68.6
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 6.6e-86 321.2 236 64.8
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 1.1e-85 320.5 235 68.5
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 1.5e-85 320.1 236 66.9
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 1.5e-85 320.1 226 67.7
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 1.9e-85 319.7 237 64.6
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 2.5e-85 319.3 225 69.8
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 2.5e-85 319.3 226 68.6
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 3.3e-85 318.9 236 64.8
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 4.3e-85 318.5 235 68.1
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 4.3e-85 318.5 235 68.5
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 9.5e-85 317.4 235 66.8
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 9.5e-85 317.4 236 66.5
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 1.2e-84 317.0 235 68.1
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 4.7e-84 315.1 235 68.9
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 4.7e-84 315.1 234 66.7
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 8.0e-84 314.3 230 66.5
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 3.1e-83 312.4 229 66.4
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 3.1e-83 312.4 236 64.4
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 3.1e-83 312.4 235 67.7
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 8.9e-83 310.8 227 67.4
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 1.2e-82 310.5 236 63.6
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 2.0e-82 309.7 230 66.1
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 2.6e-82 309.3 230 67.0
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 7.5e-82 307.8 236 62.7
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 9.8e-82 307.4 232 63.8
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 1.7e-81 306.6 237 63.3
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 2.2e-81 306.2 236 63.6
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 6.4e-81 304.7 236 62.7
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 6.4e-81 304.7 237 64.1
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 1.4e-80 303.5 229 65.5
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 1.9e-80 303.1 238 63.4
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 2.4e-80 302.8 238 62.6
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 4.1e-80 302.0 243 64.2
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 2.7e-79 299.3 236 62.3
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 2.7e-79 299.3 236 62.3
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 3.5e-79 298.9 236 61.9
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 6.0e-79 298.1 237 62.9
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 8.6e-78 294.3 228 62.3
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 1.9e-77 293.1 227 63.4
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 2.5e-77 292.7 239 59.0
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 4.7e-76 288.5 226 65.5
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 4.7e-76 288.5 224 62.1
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 4.0e-75 285.4 236 60.6
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 5.2e-75 285.0 222 64.4
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 1.5e-74 283.5 230 64.3
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 4.1e-72 275.4 240 66.2
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 5.4e-72 275.0 207 64.7
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 5.4e-72 275.0 237 57.4
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 2.1e-71 273.1 213 61.5
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 7.3e-69 264.6 221 59.7
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 3.2e-64 249.2 262 49.6
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 4.6e-63 245.4 224 56.2
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 7.3e-61 238.0 151 78.8
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.4e-59 233.8 158 72.8
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 1.7e-57 226.9 185 64.3
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 2.1e-55 219.9 241 48.1
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 1.9e-48 196.8 148 63.5
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 1.2e-47 194.1 135 65.9
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 6.0e-47 191.8 211 45.0
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 6.7e-46 188.3 226 42.5
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 1.1e-43 181.0 218 45.0
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 1.7e-41 173.7 158 53.8
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 7.1e-40 168.3 216 39.4
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 8.7e-38 161.4 215 37.7
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 5.3e-35 152.1 118 62.7
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 2.6e-34 149.8 167 47.3
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 1.4e-32 144.1 218 35.3
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 1.1e-27 127.9 99 64.6
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 7.6e-26 121.7 110 59.1
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 1.1e-21 107.8 237 32.1
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 1.1e-21 107.8 72 66.7
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 3.4e-10 69.7 70 51.4
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 3.4e-10 69.7 70 51.4
Rhsim07G0033200 Rhododendron simsii HOM05D006089 ORTHO05D007345 3.4e-10 69.7 42 73.8
MD15G1370600 Malus domestica HOM05D006862 ORTHO05D008726 4.2e-08 62.8 43 62.8


User provided reference genes

Program Settings