Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 9.9e-147 523.5 271 100.0
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 4.7e-56 222.2 270 51.5
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 1.5e-54 217.2 268 52.6
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 4.4e-54 215.7 270 50.7
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.3e-53 214.2 265 50.9
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.4e-52 209.9 271 50.2
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.7e-50 203.8 271 49.8
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 2.5e-49 199.9 270 48.5
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 4.3e-49 199.1 261 50.2
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.2e-48 197.6 264 49.2
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.6e-48 197.2 272 46.7
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 2.3e-47 193.4 274 45.3
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 2.0e-46 190.3 273 45.8
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 2.0e-46 190.3 276 46.4
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.6e-46 189.9 271 47.6
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 5.8e-46 188.7 270 48.9
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 5.8e-46 188.7 273 47.6
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 7.5e-46 188.3 271 49.1
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.9e-44 183.7 276 47.8
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 4.1e-44 182.6 267 45.3
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 9.2e-44 181.4 260 48.8
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.6e-43 179.1 274 45.3
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.6e-43 179.1 270 47.4
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 7.8e-43 178.3 274 45.6
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.3e-42 176.8 269 43.5
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 6.6e-42 175.3 279 42.7
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 6.6e-42 175.3 274 44.9
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 3.3e-41 172.9 279 44.8
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 3.3e-41 172.9 265 44.9
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 5.6e-41 172.2 282 41.5
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.6e-40 170.6 277 44.8
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 1.6e-40 170.6 267 43.1
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 2.1e-40 170.2 283 41.0
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 4.7e-40 169.1 277 44.4
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 8.0e-40 168.3 259 46.3
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.1e-39 167.9 276 44.9
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 3.1e-39 166.4 271 45.8
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 5.2e-39 165.6 284 41.9
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 6.8e-39 165.2 265 46.0
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.2e-38 164.5 270 43.0
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 1.2e-38 164.5 275 44.4
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 1.2e-38 164.5 278 41.0
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 1.5e-38 164.1 275 44.0
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 1.5e-38 164.1 274 44.2
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 3.4e-38 162.9 271 42.8
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 3.4e-38 162.9 267 46.1
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 5.8e-38 162.2 276 43.8
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 9.8e-38 161.4 268 43.3
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 2.2e-37 160.2 278 43.5
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.1e-36 157.9 280 41.1
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.4e-36 157.5 273 44.7
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 1.4e-36 157.5 279 40.5
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 3.2e-36 156.4 280 40.7
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 7.0e-36 155.2 269 41.3
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.6e-35 154.1 280 40.0
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 2.1e-35 153.7 270 40.4
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 2.7e-35 153.3 282 41.1
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 2.7e-35 153.3 270 40.4
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 3.5e-35 152.9 257 45.9
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 7.8e-35 151.8 300 39.7
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.3e-34 151.0 279 39.1
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 1.7e-34 150.6 270 40.4
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 5.1e-34 149.1 280 40.7
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 5.1e-34 149.1 307 39.4
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 8.6e-34 148.3 262 42.0
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 3.3e-33 146.4 270 44.4
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 4.3e-33 146.0 270 44.4
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 7.3e-33 145.2 265 38.5
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 9.5e-33 144.8 270 39.3
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.1e-32 143.7 264 39.8
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 2.8e-32 143.3 301 37.5
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 2.8e-32 143.3 274 39.1
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 1.4e-31 141.0 267 40.1
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 1.4e-31 141.0 266 42.5
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 1.8e-31 140.6 281 39.9
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 5.2e-31 139.0 270 38.9
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.2e-30 137.9 274 39.8
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.5e-30 137.5 272 40.4
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 2.0e-30 137.1 262 39.7
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 3.4e-30 136.3 302 38.7
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 9.9e-30 134.8 261 37.5
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 1.3e-29 134.4 290 36.6
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 1.3e-29 134.4 282 36.9
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 1.7e-29 134.0 202 46.5
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 3.7e-29 132.9 269 39.4
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 4.9e-29 132.5 277 37.9
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 8.3e-29 131.7 283 36.4
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 8.3e-29 131.7 266 39.5
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 1.4e-28 131.0 268 38.8
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 1.9e-28 130.6 273 38.8
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 3.2e-28 129.8 293 37.2
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 2.1e-27 127.1 296 35.8
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 4.6e-27 125.9 296 35.5
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 4.6e-27 125.9 304 36.8
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 6.0e-27 125.6 285 36.8
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 7.8e-27 125.2 271 38.0
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 1.0e-26 124.8 283 38.9
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 3.0e-26 123.2 237 40.5
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 5.1e-26 122.5 273 38.1
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 4.3e-25 119.4 273 38.1
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 5.6e-25 119.0 276 35.9
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 9.5e-25 118.2 291 32.6
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 9.5e-25 118.2 257 38.1
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.2e-24 117.9 280 36.4
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.6e-24 117.5 273 37.7
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 2.1e-24 117.1 274 35.8
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 4.7e-24 115.9 284 36.3
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 6.2e-24 115.5 239 38.5
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 6.2e-24 115.5 211 39.3
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 1.1e-23 114.8 271 37.6
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 3.1e-23 113.2 244 39.8
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 5.2e-23 112.5 276 34.4
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 6.8e-23 112.1 248 36.7
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 1.2e-22 111.3 268 33.2
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 1.5e-22 110.9 268 35.4
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 4.4e-22 109.4 287 35.9
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 7.6e-22 108.6 274 36.5
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 1.3e-21 107.8 268 35.1
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 1.7e-21 107.5 273 34.4
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.9e-21 106.7 282 34.0
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 4.9e-21 105.9 272 36.8
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.1e-20 104.8 296 35.5
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.4e-20 104.4 280 34.3
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 3.2e-20 103.2 266 35.0
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 7.1e-20 102.1 274 32.8
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-19 101.3 274 32.1
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.7e-19 100.1 274 32.1
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 2.7e-19 100.1 274 32.1
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 4.6e-19 99.4 211 36.0
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 4.6e-19 99.4 271 34.3
HanXRQChr12g0366681 Helianthus annuus HOM05D003173 ORTHO05D003546 6.0e-19 99.0 274 33.9
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 7.8e-19 98.6 287 33.8
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 1.0e-18 98.2 272 33.5
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.7e-18 97.4 221 40.3
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 1.7e-18 97.4 242 33.9
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 3.0e-18 96.7 282 34.0
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 5.1e-18 95.9 201 38.3
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 8.7e-18 95.1 124 47.6
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 1.5e-17 94.4 240 33.3
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.9e-17 94.0 279 31.9
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 3.3e-17 93.2 285 31.6
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 5.6e-17 92.4 240 32.9
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 1.6e-16 90.9 216 35.2
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 6.2e-16 89.0 259 30.1
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 8.1e-16 88.6 260 35.0
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 2.4e-15 87.0 268 29.9
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 9.0e-15 85.1 281 30.2
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-14 84.7 263 30.0
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 1.2e-14 84.7 289 31.5
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 2.6e-14 83.6 264 30.7
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 2.6e-14 83.6 262 30.2
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 3.4e-14 83.2 212 32.5
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 3.4e-14 83.2 212 32.5
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 3.4e-14 83.2 212 32.5
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 4.4e-14 82.8 222 32.0
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 4.4e-14 82.8 231 33.3
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 5.8e-14 82.4 267 31.1
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 7.6e-14 82.0 222 32.0
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 7.6e-14 82.0 222 32.0
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 9.9e-14 81.6 268 29.5
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 9.9e-14 81.6 268 29.5
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.7e-13 80.9 228 33.8
Potri.005G107500 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.2e-13 80.5 264 29.5
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 2.9e-13 80.1 246 33.3
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 1.9e-12 77.4 256 31.6
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 3.2e-12 76.6 137 37.2
MBI17_g07971_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 3.2e-12 76.6 228 31.1
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 4.2e-12 76.3 220 32.7
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.1e-11 73.9 262 29.0
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 3.5e-11 73.2 117 41.0
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 1.0e-10 71.6 270 30.0
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 3.0e-10 70.1 219 31.1
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 3.0e-10 70.1 216 30.6
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 3.0e-10 70.1 222 27.9
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 8.7e-10 68.6 215 30.2
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 5.6e-09 65.9 262 27.9
HanXRQChr12g0366691 Helianthus annuus HOM05D003173 ORTHO05D003546 5.6e-09 65.9 279 28.3
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 9.6e-09 65.1 179 32.4
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.3e-08 64.7 195 31.8
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 1.1e-07 61.6 217 33.6
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.1e-07 61.6 192 30.7
SHI27843 Sapria himalayana HOM05D003173 ORTHO05D003546 1.4e-07 61.2 145 33.1
CiPaw.07G063500 Carya illinoinensis HOM05D003173 ORTHO05D003546 4.0e-07 59.7 215 31.2
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 9.0e-07 58.5 263 26.6
Glyma.02G043800 Glycine max HOM05D003173 ORTHO05D003546 1.2e-06 58.2 179 30.2


User provided reference genes

Program Settings