Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 3.3e-172 608.2 298 100.0
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 3.3e-135 485.3 298 77.5
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.4e-131 471.1 298 75.2
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 9.2e-130 467.2 298 76.8
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 3.5e-129 465.3 291 76.3
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 2.3e-128 462.6 292 75.3
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 6.6e-128 461.1 298 74.2
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.6e-126 455.3 292 76.0
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 4.7e-126 454.9 278 78.1
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 1.1e-125 453.8 288 76.4
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.4e-125 453.4 292 75.7
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.8e-125 453.0 292 75.7
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.2e-124 450.3 293 75.8
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.0e-124 449.5 293 74.7
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.7e-121 439.1 298 72.1
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.3e-120 436.8 339 64.9
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.7e-120 436.4 292 72.6
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.3e-120 436.0 298 71.8
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.5e-119 433.3 301 71.1
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.3e-119 431.8 296 72.6
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 7.3e-119 431.0 292 71.2
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 9.6e-119 430.6 292 72.3
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.6e-118 428.7 295 71.2
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 8.9e-117 424.1 289 72.3
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.6e-116 422.5 298 69.1
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 4.9e-115 418.3 283 72.8
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 7.1e-114 414.5 292 70.2
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 7.1e-114 414.5 293 68.9
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.2e-113 413.7 287 70.4
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 2.1e-113 412.9 296 66.6
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 4.6e-113 411.8 285 70.9
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 3.0e-112 409.1 292 68.2
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 3.9e-112 408.7 278 69.4
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 8.7e-112 407.5 280 70.4
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.1e-111 407.1 293 67.9
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 2.5e-111 406.0 296 66.6
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 3.3e-111 405.6 289 69.6
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 5.6e-111 404.8 287 69.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.6e-111 404.8 288 68.1
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 7.3e-111 404.4 292 68.8
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.6e-110 403.3 243 76.5
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.6e-110 403.3 293 67.9
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 4.8e-110 401.7 286 66.8
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 4.8e-110 401.7 273 70.0
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.1e-109 400.6 288 68.1
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.4e-109 400.2 291 66.0
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.8e-109 399.8 269 70.3
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.8e-109 399.8 289 66.1
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 2.4e-109 399.4 284 68.3
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 2.4e-109 399.4 286 66.4
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 5.3e-109 398.3 286 67.1
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 9.0e-109 397.5 288 67.4
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 9.0e-109 397.5 275 69.1
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.2e-108 397.1 293 66.2
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.5e-108 396.7 284 69.0
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.0e-108 396.4 291 67.7
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.6e-108 396.0 276 68.1
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.6e-108 396.0 291 65.3
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 3.4e-108 395.6 269 70.6
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 5.8e-108 394.8 295 67.1
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.7e-107 393.3 288 65.6
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.9e-107 392.5 298 64.8
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 3.8e-107 392.1 288 65.6
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.1e-106 390.6 274 69.3
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.9e-106 389.8 300 64.0
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 2.4e-106 389.4 273 70.3
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 2.4e-106 389.4 292 66.8
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.6e-105 386.7 295 64.7
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.6e-105 386.7 303 63.7
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 3.5e-105 385.6 260 70.0
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.7e-104 383.3 254 70.1
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 3.0e-104 382.5 291 64.9
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 3.9e-104 382.1 314 61.8
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.7e-104 380.9 274 68.2
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.1e-101 374.0 295 65.1
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 2.4e-101 372.9 236 74.6
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 4.0e-101 372.1 298 62.1
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.2e-100 370.5 248 72.2
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 4.5e-100 368.6 300 61.7
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 4.5e-100 368.6 289 60.9
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 7.1e-98 361.3 282 62.1
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 3.5e-97 359.0 258 65.9
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.8e-96 356.7 261 64.0
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.9e-95 353.2 283 62.5
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 2.4e-93 346.3 260 62.3
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 6.9e-93 344.7 281 56.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 5.8e-92 341.7 296 57.4
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 7.6e-92 341.3 276 60.5
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.2e-91 339.7 250 62.0
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.6e-89 332.0 239 68.2
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.9e-87 326.6 287 55.4
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.0e-84 316.6 263 61.2
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 6.7e-80 301.6 301 51.2
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 6.7e-80 301.6 297 48.5
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.5e-79 299.7 287 51.2
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 3.3e-79 299.3 287 51.9
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 8.2e-78 294.7 270 58.5
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.1e-77 294.3 300 51.0
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-77 294.3 296 50.3
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-77 294.3 285 51.9
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-77 294.3 296 50.3
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 9.0e-77 291.2 288 50.0
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-76 290.4 304 50.3
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 2.6e-76 289.7 286 50.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.6e-76 289.7 290 50.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 7.7e-76 288.1 303 49.5
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-75 287.0 291 49.8
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.7e-75 287.0 305 49.8
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.2e-75 286.6 286 51.4
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.9e-74 283.5 287 48.8
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.2e-73 280.8 253 53.0
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.4e-72 277.3 258 51.6
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 9.7e-71 271.2 290 51.4
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.3e-70 270.8 283 50.2
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 3.3e-63 246.1 276 44.2
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.4e-53 213.4 255 42.7
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.5e-50 202.2 195 50.3
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 7.2e-50 201.8 274 40.1
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.4e-47 193.0 237 43.5
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.2e-44 184.5 269 38.7
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.7e-44 183.3 228 42.1
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-43 181.0 277 41.2
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-40 170.6 239 41.4
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 2.3e-40 170.2 207 46.9
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 8.8e-40 168.3 177 47.5
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 9.8e-39 164.9 175 49.7
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-38 164.1 207 46.9
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.2e-38 163.7 243 40.3
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 3.7e-38 162.9 196 43.9
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 4.9e-38 162.5 225 44.9
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 6.3e-38 162.2 277 39.0
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 4.1e-37 159.5 277 37.2
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-33 147.9 278 36.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-32 144.1 142 49.3
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 3.4e-31 139.8 215 40.9
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.7e-30 137.5 206 38.8
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.2e-30 137.1 150 42.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-29 134.0 142 48.6
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 5.6e-26 122.5 207 40.1
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 5.6e-26 122.5 207 40.1
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 9.8e-23 111.7 191 35.1
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 7.0e-21 105.5 164 36.6
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 1.0e-19 101.7 68 69.1
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-18 97.4 145 43.4
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 5.6e-18 95.9 96 51.0
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 6.8e-16 89.0 62 61.3
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 6.8e-16 89.0 62 61.3
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.6e-12 76.3 101 43.6
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 2.2e-06 57.4 138 25.4


User provided reference genes

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