Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 9.0e-165 583.6 305 100.0
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 5.4e-125 451.4 301 77.4
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 5.4e-125 451.4 301 77.4
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 5.0e-115 418.3 304 72.4
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 6.6e-115 417.9 305 73.1
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 7.3e-114 414.5 290 77.6
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 9.5e-114 414.1 264 79.2
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 2.1e-113 412.9 310 70.6
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 2.8e-113 412.5 250 82.0
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.8e-112 409.8 310 71.0
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 1.8e-112 409.8 306 72.2
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 2.3e-112 409.5 294 73.1
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 3.0e-112 409.1 304 70.7
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 3.0e-112 409.1 304 70.7
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 6.8e-112 407.9 278 76.6
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 6.8e-112 407.9 304 70.7
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 8.9e-112 407.5 302 69.9
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 7.5e-111 404.4 305 71.1
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 9.8e-111 404.1 310 70.6
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 3.7e-110 402.1 315 67.3
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.7e-110 402.1 301 70.4
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 8.3e-110 401.0 304 70.7
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.4e-109 400.2 302 70.5
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 2.4e-109 399.4 251 80.1
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.2e-108 397.1 299 69.9
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 4.6e-108 395.2 287 73.9
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 5.9e-108 394.8 295 69.8
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 7.8e-108 394.4 293 71.0
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 1.0e-107 394.0 236 81.8
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 1.0e-107 394.0 298 69.5
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 5.0e-107 391.7 301 68.1
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.1e-106 390.6 289 71.3
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.5e-106 390.2 248 79.0
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 5.6e-106 388.3 311 69.1
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 7.3e-106 387.9 312 67.6
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 8.0e-105 384.4 309 66.3
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 3.4e-103 379.0 294 67.7
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.9e-102 375.9 229 81.2
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 4.9e-102 375.2 304 65.1
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.4e-101 373.6 308 65.6
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 1.9e-101 373.2 292 70.2
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 3.2e-101 372.5 248 73.8
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 4.1e-101 372.1 266 70.7
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 9.2e-101 370.9 295 66.1
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 9.2e-101 370.9 300 68.0
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 1.2e-100 370.5 246 76.4
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 2.0e-100 369.8 248 74.2
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 2.0e-100 369.8 248 74.2
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 3.5e-100 369.0 245 75.5
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 4.6e-100 368.6 303 65.7
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 6.0e-100 368.2 330 62.4
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 7.8e-100 367.9 301 66.8
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 7.8e-100 367.9 267 72.7
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 1.0e-99 367.5 266 69.5
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.7e-99 366.7 237 76.8
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 3.0e-99 365.9 245 75.1
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 6.6e-99 364.8 295 66.1
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.5e-98 363.6 298 64.1
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.5e-98 363.6 237 75.9
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.3e-98 362.1 306 63.7
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 1.2e-97 360.5 275 65.1
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 2.1e-97 359.8 236 76.3
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 4.7e-97 358.6 245 71.8
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.1e-96 357.5 248 71.4
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 1.4e-96 357.1 247 72.5
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.4e-96 357.1 248 72.6
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 6.8e-96 354.8 248 72.6
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 6.8e-96 354.8 390 54.4
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 8.9e-96 354.4 287 63.8
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 8.9e-96 354.4 248 72.6
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 1.5e-95 353.6 295 64.7
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 2.6e-95 352.8 228 75.4
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 2.6e-95 352.8 297 61.6
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 3.4e-95 352.4 302 61.9
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 1.3e-94 350.5 226 77.0
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 2.2e-94 349.7 249 69.9
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.1e-93 347.4 278 66.9
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.4e-93 347.1 295 62.4
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 5.4e-93 345.1 248 69.8
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 5.4e-93 345.1 295 62.4
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 7.1e-93 344.7 249 69.5
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.6e-92 343.6 295 62.4
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 2.1e-92 343.2 250 68.0
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 4.6e-92 342.0 265 63.8
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 6.0e-92 341.7 248 69.4
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 1.1e-90 337.4 296 60.8
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.9e-90 336.7 252 67.1
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 1.9e-90 336.7 308 60.1
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 3.3e-90 335.9 345 54.5
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.6e-89 333.6 253 67.2
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.5e-87 327.0 335 54.6
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 2.6e-87 326.2 301 61.1
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 2.7e-84 316.2 228 68.4
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.3e-83 313.2 416 45.7
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 8.1e-81 304.7 188 80.9
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 1.4e-80 303.9 233 67.0
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 1.1e-77 294.3 194 75.3
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 1.0e-75 287.7 213 70.0
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 2.5e-74 283.1 245 56.3
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.3e-74 282.7 315 52.4
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.8e-73 279.6 242 62.8
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 2.0e-71 273.5 243 53.9
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 4.5e-71 272.3 251 59.8
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.4e-69 266.5 212 60.4
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 4.6e-68 262.3 193 64.8
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 6.0e-68 261.9 249 53.0
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 3.3e-66 256.1 294 53.1
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.4e-61 240.7 235 50.6
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.6e-60 237.3 301 48.2
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 3.5e-60 236.1 273 45.4
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 3.0e-59 233.0 208 62.5
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.1e-53 214.5 173 62.4
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 2.5e-53 213.4 142 76.8
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 4.6e-52 209.1 250 44.8
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 7.9e-52 208.4 201 60.2
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 3.3e-50 203.0 269 42.8
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 2.0e-47 193.7 139 66.2
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 5.9e-47 192.2 251 43.0
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 1.8e-40 170.6 202 46.5
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 7.7e-39 165.2 123 67.5
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 5.3e-32 142.5 163 48.5
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 3.5e-23 113.2 81 63.0
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 4.7e-20 102.8 78 59.0
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 1.7e-06 57.8 36 77.8


User provided reference genes

Program Settings