Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 5.5e-178 627.5 310 100.0
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 6.8e-144 514.2 310 80.3
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.0e-139 500.4 310 76.5
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 3.9e-139 498.4 310 76.5
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 1.2e-137 493.4 310 77.4
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 1.8e-136 489.6 310 74.5
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.5e-135 486.5 310 75.5
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 6.4e-134 481.1 312 75.3
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.4e-133 479.9 316 74.1
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.9e-133 479.6 306 74.2
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 3.2e-133 478.8 315 74.3
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 7.1e-133 477.6 310 75.2
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.5e-132 475.3 310 73.2
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 3.5e-132 475.3 310 73.2
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 7.8e-132 474.2 310 73.2
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 1.0e-131 473.8 308 74.7
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 5.1e-131 471.5 306 73.2
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 6.6e-131 471.1 307 73.9
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.5e-130 469.9 310 72.3
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.9e-130 469.5 310 72.9
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 3.3e-130 468.8 310 71.3
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.6e-129 466.5 282 79.8
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 3.6e-129 465.3 305 74.1
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 4.8e-129 464.9 307 72.6
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 8.1e-129 464.2 310 72.9
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.1e-128 463.8 310 71.6
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 5.3e-128 461.5 310 71.3
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 1.5e-127 459.9 310 72.6
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 2.6e-127 459.1 307 72.6
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 7.6e-127 457.6 310 71.6
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 9.9e-127 457.2 310 72.3
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 1.1e-125 453.8 310 71.0
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.4e-125 453.4 307 72.0
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 3.2e-125 452.2 310 69.7
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 4.2e-125 451.8 307 72.3
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 9.3e-125 450.7 291 75.3
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.6e-124 448.4 307 71.3
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 7.9e-124 447.6 307 72.0
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.0e-123 447.2 312 70.8
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 1.0e-123 447.2 307 70.4
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 1.0e-123 447.2 307 71.3
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 1.3e-123 446.8 309 69.9
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.3e-123 446.8 309 70.2
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 2.3e-123 446.0 306 69.9
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 3.0e-123 445.7 307 70.7
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 5.1e-123 444.9 309 69.9
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 8.7e-123 444.1 304 71.1
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 1.1e-122 443.7 341 64.8
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 1.9e-122 443.0 316 69.9
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 2.5e-122 442.6 308 69.2
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 2.5e-122 442.6 306 68.0
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 5.6e-122 441.4 312 69.6
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 5.6e-122 441.4 307 70.4
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 9.6e-122 440.7 307 70.0
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 2.1e-121 439.5 304 70.1
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 3.7e-121 438.7 320 66.9
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 4.8e-121 438.3 304 68.8
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 8.1e-121 437.6 315 68.3
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.1e-120 437.2 304 66.8
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.4e-120 436.8 308 66.9
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 3.1e-120 435.6 310 69.0
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 4.0e-120 435.3 341 63.3
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 5.3e-120 434.9 306 68.0
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 5.3e-120 434.9 306 68.6
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 6.9e-120 434.5 306 68.0
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 6.9e-120 434.5 281 73.7
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 4.5e-119 431.8 316 68.0
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 7.6e-119 431.0 308 67.5
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 9.9e-119 430.6 336 64.6
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 1.3e-118 430.3 307 66.1
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 4.9e-118 428.3 312 67.0
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 6.4e-118 427.9 309 67.6
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 9.3e-117 424.1 307 68.7
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.2e-116 423.7 297 68.4
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 2.7e-116 422.5 309 67.6
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 4.6e-116 421.8 311 67.8
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 6.0e-116 421.4 302 66.9
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 2.3e-115 419.5 306 67.6
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 5.1e-115 418.3 309 67.0
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.9e-114 416.4 332 63.0
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 1.9e-114 416.4 308 66.2
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 1.6e-113 413.3 308 63.6
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 6.9e-112 407.9 308 63.6
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 8.4e-110 401.0 311 64.3
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 1.6e-108 396.7 370 55.4
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 2.1e-108 396.4 284 68.7
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 6.0e-108 394.8 356 58.4
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 7.9e-108 394.4 305 66.2
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 8.7e-107 391.0 310 62.3
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.3e-105 387.1 283 69.3
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 2.2e-105 386.3 283 69.6
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 1.8e-104 383.3 346 57.2
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 4.1e-96 355.5 310 58.4
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 2.6e-95 352.8 283 64.3
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 7.7e-95 351.3 304 57.6
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 2.9e-94 349.4 315 58.7
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 2.9e-94 349.4 325 55.1
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.9e-93 346.7 309 58.3
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.0e-91 340.9 304 55.6
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 1.4e-91 340.5 298 59.1
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.7e-86 323.6 284 58.1
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.7e-86 323.6 222 68.9
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 4.2e-85 318.9 225 69.3
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 3.6e-84 315.8 299 53.8
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.8e-83 313.5 300 54.0
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 4.8e-81 305.4 224 65.2
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 1.1e-77 294.3 316 50.3
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 5.7e-74 282.0 202 66.3
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 7.2e-69 265.0 200 65.5
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 9.4e-69 264.6 192 69.8
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 2.7e-68 263.1 200 62.5
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 6.1e-68 261.9 199 63.8
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 5.7e-66 255.4 167 74.3
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 8.3e-65 251.5 218 57.3
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 7.0e-64 248.4 236 57.2
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 8.6e-54 214.9 203 55.7
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 3.0e-51 206.5 202 55.0
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.6e-50 203.4 138 72.5
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 1.7e-49 200.7 310 39.4
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 4.1e-48 196.1 154 60.4
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 9.2e-48 194.9 395 34.2
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.2e-41 173.7 131 66.4
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 8.6e-38 161.8 117 68.4
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 3.3e-37 159.8 300 33.3
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 3.4e-34 149.8 278 35.3
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 4.9e-33 146.0 310 31.9
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 1.5e-29 134.4 112 56.2
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 9.5e-29 131.7 83 72.3
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 1.0e-22 111.7 87 56.3
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.2e-15 88.2 79 58.2
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 6.6e-14 82.4 63 60.3
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.9e-13 80.9 74 56.8
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.8e-12 77.0 52 65.4
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 3.1e-11 73.6 126 35.7
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 5.8e-10 69.3 77 48.1
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 4.6e-07 59.7 50 56.0
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 1.3e-06 58.2 36 75.0


User provided reference genes

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