Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 2.3e-201 705.3 344 100.0
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 9.6e-155 550.4 374 72.2
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.1e-154 549.3 344 78.2
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.5e-152 543.1 342 76.6
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 9.9e-152 540.4 324 79.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.4e-150 535.8 326 79.1
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 6.0e-149 531.2 343 74.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.7e-148 529.6 342 74.0
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.3e-148 529.3 341 74.8
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 8.7e-148 527.3 335 74.9
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.1e-147 526.9 345 75.7
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 5.6e-147 524.6 344 73.8
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.1e-146 522.7 335 74.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 8.1e-146 520.8 333 74.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.4e-145 519.2 333 75.4
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.5e-144 516.5 345 72.8
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 3.4e-144 515.4 340 73.5
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.7e-143 513.1 344 73.0
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 2.2e-143 512.7 342 72.8
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.2e-143 512.7 340 73.5
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.9e-143 511.5 346 72.0
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 4.9e-143 511.5 391 65.2
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.1e-142 510.4 325 73.2
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.4e-142 510.0 329 74.2
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.4e-142 509.2 319 75.5
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.4e-142 509.2 329 73.6
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 5.4e-142 508.1 330 73.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 7.1e-142 507.7 340 70.6
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 7.1e-142 507.7 340 70.6
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 9.3e-142 507.3 329 73.3
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 9.3e-142 507.3 331 72.5
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.7e-141 505.8 329 72.9
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 7.9e-141 504.2 334 72.5
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.7e-140 503.1 330 74.2
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.3e-140 502.7 399 64.2
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.5e-139 500.0 331 73.7
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 7.3e-139 497.7 340 72.6
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.3e-138 496.9 314 75.8
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.8e-138 495.0 325 70.8
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 4.8e-138 495.0 324 70.7
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 4.8e-138 495.0 336 72.9
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 6.2e-138 494.6 338 70.4
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.8e-137 493.0 328 72.3
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 3.1e-137 492.3 340 71.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 5.3e-137 491.5 338 71.0
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.5e-136 490.0 341 68.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.4e-136 488.8 333 70.0
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 4.5e-136 488.4 324 71.3
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 7.6e-136 487.6 333 71.2
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 7.6e-136 487.6 316 73.7
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.2e-135 486.1 337 68.8
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.9e-135 485.7 333 69.7
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 4.9e-135 485.0 333 69.7
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 8.4e-135 484.2 339 68.1
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.9e-134 483.0 333 70.3
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 5.4e-134 481.5 325 71.4
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 3.5e-133 478.8 342 68.4
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.3e-132 476.9 324 71.0
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.8e-132 476.5 324 71.0
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 8.7e-132 474.2 316 72.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.9e-131 473.0 371 62.5
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 7.4e-131 471.1 328 68.9
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.3e-130 470.3 328 68.6
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.6e-130 469.9 328 68.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 3.1e-129 465.7 317 71.0
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 4.0e-129 465.3 318 69.8
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.2e-128 463.8 336 67.0
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.4e-128 462.2 343 65.3
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.0e-127 460.7 344 65.4
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.2e-127 459.5 365 63.6
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.2e-127 459.5 365 63.6
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.8e-127 458.8 325 67.4
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.9e-127 458.4 333 67.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.4e-126 456.8 333 66.4
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.9e-126 456.4 286 76.2
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.5e-125 452.2 312 69.2
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 6.0e-125 451.4 339 66.1
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.0e-124 449.1 309 68.6
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 4.8e-122 441.8 325 63.7
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 4.1e-121 438.7 321 66.0
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.0e-120 436.4 265 75.5
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 2.0e-120 436.4 322 64.6
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.8e-120 434.9 280 73.6
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.2e-119 433.0 345 62.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.0e-119 431.8 306 66.7
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-118 430.6 272 74.6
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.2e-117 427.2 382 58.4
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 3.0e-116 422.5 269 73.6
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 5.1e-116 421.8 314 66.6
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 5.7e-115 418.3 303 68.6
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 9.0e-113 411.0 260 73.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 2.6e-112 409.5 316 61.7
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.6e-112 409.5 332 60.2
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 9.4e-110 401.0 328 62.5
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.6e-109 400.2 324 61.1
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.9e-108 395.6 251 72.5
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 8.8e-108 394.4 246 75.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 5.7e-107 391.7 348 56.0
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.8e-105 386.7 339 58.4
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.2e-104 384.0 211 82.0
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.2e-103 379.8 328 58.5
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 3.8e-103 379.0 346 56.9
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 4.2e-102 375.6 334 56.0
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.6e-101 373.6 289 63.0
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.6e-101 372.5 328 60.7
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.0e-100 370.9 402 50.5
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 2.3e-100 369.8 322 61.8
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.7e-98 363.6 267 67.8
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.2e-98 363.2 243 70.4
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.8e-97 360.1 313 58.5
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 7.0e-97 358.2 330 56.4
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.2e-96 357.5 297 59.3
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.9e-94 350.1 325 60.0
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.2e-94 349.4 340 58.2
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.4e-94 347.8 334 58.4
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.2e-92 342.0 317 59.9
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 2.6e-91 339.7 288 59.7
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 5.7e-91 338.6 331 58.3
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.7e-90 337.0 283 60.8
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 8.2e-90 334.7 392 48.0
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.0e-84 317.8 330 56.1
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.0e-80 303.5 251 58.6
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 2.0e-80 303.5 306 51.0
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.5e-70 270.0 310 44.2
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.3e-70 269.2 303 46.5
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.6e-64 250.8 311 42.4
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 5.6e-62 242.3 251 49.0
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 8.0e-61 238.4 241 53.1
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.3e-60 236.9 139 74.8
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.2e-59 234.6 144 74.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.7e-58 229.6 303 41.6
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.1e-54 218.0 112 86.6
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.9e-54 217.2 153 69.3
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 2.0e-51 207.2 252 43.7
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.6e-51 206.8 160 59.4
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 3.7e-50 203.0 250 42.8
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 5.4e-49 199.1 204 46.1
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 2.7e-48 196.8 320 40.3
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.3e-42 177.9 250 42.4
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.2e-42 177.2 298 35.9
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 7.3e-38 162.2 101 71.3
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.8e-37 160.2 223 40.8
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 3.9e-31 139.8 254 33.1
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.5e-30 137.1 245 35.1
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.8e-26 123.2 394 26.1
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.4e-25 119.4 216 33.8
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.3e-25 118.6 250 31.2
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-22 111.7 153 41.2
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.1e-22 111.7 65 76.9
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.1e-22 111.7 65 76.9
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.5e-22 111.3 84 65.5
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 2.5e-22 110.5 65 75.4
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 3.3e-22 110.2 114 40.4
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 3.3e-22 110.2 212 34.4
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 3.3e-22 110.2 304 29.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 4.3e-22 109.8 113 41.6
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.0e-20 102.1 163 33.1
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 3.2e-17 93.6 304 25.3
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 4.2e-17 93.2 252 28.2
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 4.6e-16 89.7 60 65.0
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.5e-14 84.7 80 56.2
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 1.3e-13 81.6 104 46.2
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 9.0e-12 75.5 92 44.6
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 1.9e-09 67.8 63 63.5


User provided reference genes

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