Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 8.9e-201 703.4 346 100.0
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 7.6e-144 514.2 342 74.6
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 7.9e-141 504.2 342 75.1
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 2.2e-138 496.1 342 73.1
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 3.1e-137 492.3 338 74.3
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 2.9e-135 485.7 342 71.3
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 5.0e-135 485.0 342 72.2
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 6.5e-135 484.6 342 71.6
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 2.1e-133 479.6 341 69.8
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 1.0e-132 477.2 345 70.1
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 5.1e-132 474.9 347 69.7
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 6.7e-132 474.6 343 69.1
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 1.9e-131 473.0 347 69.5
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 9.7e-131 470.7 342 71.3
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 1.3e-130 470.3 342 71.1
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 2.8e-130 469.2 341 68.0
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 6.3e-130 468.0 353 68.0
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 3.8e-127 458.8 344 67.4
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 3.2e-126 455.7 350 68.6
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 3.2e-126 455.7 346 66.8
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 3.2e-126 455.7 331 67.4
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 7.2e-126 454.5 345 67.8
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 1.2e-125 453.8 338 67.2
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 7.9e-125 451.1 340 67.1
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 2.3e-124 449.5 366 63.9
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 6.7e-124 448.0 339 66.4
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 1.5e-123 446.8 348 64.4
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 2.0e-123 446.4 339 66.4
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 5.7e-123 444.9 342 64.3
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 9.7e-123 444.1 340 65.3
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 1.7e-122 443.4 340 65.9
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 1.7e-122 443.4 342 65.2
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 2.8e-122 442.6 337 65.3
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 4.8e-122 441.8 339 65.2
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 4.8e-122 441.8 342 64.6
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 4.8e-122 441.8 346 64.5
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 8.2e-122 441.0 344 64.5
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 5.3e-121 438.3 338 65.4
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 5.3e-121 438.3 337 65.0
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 9.1e-121 437.6 342 63.5
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 9.1e-121 437.6 340 65.3
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 9.1e-121 437.6 359 64.9
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 2.0e-120 436.4 352 64.5
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 2.6e-120 436.0 342 63.2
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 2.6e-120 436.0 335 65.1
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 2.6e-120 436.0 344 64.5
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 5.9e-120 434.9 308 67.5
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 1.0e-119 434.1 341 64.5
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 1.0e-119 434.1 348 63.2
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 1.7e-119 433.3 339 64.9
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 2.2e-119 433.0 359 62.7
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 2.9e-119 432.6 347 64.8
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 5.0e-119 431.8 317 70.0
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 2.5e-118 429.5 338 64.2
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 3.2e-118 429.1 341 63.3
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 9.4e-118 427.6 335 63.3
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.7e-117 426.0 309 65.7
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 4.7e-117 425.2 350 64.6
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 6.1e-117 424.9 352 63.1
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.4e-116 423.7 316 70.3
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 1.8e-116 423.3 316 65.5
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 1.8e-116 423.3 298 66.4
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 1.1e-115 420.6 303 65.3
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 3.3e-115 419.1 303 65.3
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 5.7e-115 418.3 347 61.7
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 7.4e-115 417.9 347 60.5
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 2.2e-114 416.4 303 64.7
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 3.7e-114 415.6 323 64.4
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 6.3e-114 414.8 339 61.1
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 1.4e-113 413.7 350 61.7
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 1.8e-113 413.3 297 66.7
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 3.5e-112 409.1 314 65.3
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 5.9e-112 408.3 342 62.6
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 1.3e-111 407.1 342 62.3
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 3.8e-111 405.6 346 61.3
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 5.5e-110 401.7 342 62.6
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 1.2e-109 400.6 294 66.7
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 2.1e-109 399.8 299 64.5
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 2.7e-109 399.4 342 61.4
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 2.7e-109 399.4 357 59.1
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.0e-108 397.5 306 68.3
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 5.2e-108 395.2 343 62.4
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 5.2e-108 395.2 343 62.4
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 5.7e-107 391.7 313 63.6
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 2.4e-105 386.3 344 59.6
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 4.1e-105 385.6 339 60.8
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 5.9e-104 381.7 303 62.7
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 1.3e-103 380.6 215 80.0
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 1.9e-102 376.7 314 61.5
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 9.4e-102 374.4 271 64.2
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 1.8e-100 370.2 304 58.9
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 4.4e-99 365.5 283 62.5
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 1.3e-98 364.0 322 59.0
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 3.7e-98 362.5 246 71.5
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 1.1e-97 360.9 269 64.7
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.6e-96 357.1 324 58.0
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 1.1e-94 350.9 351 54.7
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 2.8e-93 346.3 292 61.3
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 3.1e-89 332.8 344 51.5
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 1.4e-84 317.4 348 51.7
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 2.4e-81 306.6 254 65.0
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 1.1e-73 281.2 321 45.8
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 8.1e-69 265.0 293 49.1
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 5.8e-67 258.8 331 43.8
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 5.8e-67 258.8 287 49.1
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 8.3e-66 255.0 226 61.9
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 1.2e-64 251.1 207 60.9
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 3.6e-61 239.6 224 58.5
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 2.4e-60 236.9 189 61.4
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 5.8e-59 232.3 248 45.2
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 8.1e-53 211.8 324 40.7
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 9.9e-51 204.9 292 41.1
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 4.8e-45 186.0 164 53.7
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 9.0e-44 181.8 343 35.9
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 6.4e-34 149.1 114 58.8
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 5.1e-31 139.4 167 52.7
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 7.4e-30 135.6 166 53.6
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 1.5e-19 101.3 143 48.3
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 1.3e-13 81.6 163 39.9
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 4.1e-12 76.6 45 75.6
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 2.5e-09 67.4 101 40.6
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 1.4e-07 61.6 33 72.7
SMO172G0225 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.1e-06 58.5 62 45.2


User provided reference genes

Program Settings