Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.3e-210 736.1 370 100.0
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 2.8e-120 436.0 381 66.7
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 1.8e-119 433.3 387 64.9
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.5e-118 430.3 381 66.1
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 4.5e-118 428.7 372 65.3
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 4.4e-113 412.1 388 64.9
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.2e-112 409.8 374 64.4
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 8.2e-112 407.9 373 63.0
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 7.0e-111 404.8 381 60.6
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 5.9e-110 401.7 384 62.0
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.2e-109 399.8 369 65.0
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 8.5e-109 397.9 380 60.3
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.1e-108 397.5 380 60.3
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.2e-108 395.6 380 60.3
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 9.4e-108 394.4 383 61.1
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 4.7e-107 392.1 380 61.3
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.8e-106 390.2 377 59.4
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 2.0e-105 386.7 400 59.8
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.0e-105 386.7 371 62.8
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.8e-104 382.9 381 59.1
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.8e-104 382.9 381 59.1
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 3.1e-103 379.4 371 60.6
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 7.0e-103 378.3 372 60.5
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.7e-102 376.3 374 59.1
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.5e-102 375.9 373 59.2
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 2.2e-101 373.2 387 58.7
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 6.5e-101 371.7 373 61.4
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 7.2e-100 368.2 371 60.4
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 4.7e-99 365.5 389 57.6
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 5.7e-97 358.6 371 59.0
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 2.8e-96 356.3 395 55.9
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.8e-95 353.6 373 56.3
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.6e-94 350.5 387 55.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 3.5e-94 349.4 353 59.8
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 4.5e-94 349.0 382 56.8
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 1.7e-93 347.1 392 55.1
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 2.9e-93 346.3 390 55.6
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 5.0e-93 345.5 350 58.0
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.1e-92 344.4 394 55.1
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.2e-91 340.9 371 53.9
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 3.6e-91 339.3 371 58.5
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 8.0e-91 338.2 371 54.7
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 8.0e-91 338.2 378 54.5
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 3.0e-90 336.3 370 53.5
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 8.9e-90 334.7 368 53.3
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.5e-89 334.0 388 53.1
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 2.0e-89 333.6 368 53.0
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 2.6e-89 333.2 357 55.2
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.2e-88 330.1 384 56.0
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 7.8e-86 321.6 372 52.4
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.0e-85 321.2 377 54.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.3e-85 320.1 387 54.3
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.2e-83 314.3 377 54.4
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 4.7e-83 312.4 365 52.6
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 3.1e-82 309.7 393 49.9
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 3.7e-80 302.8 388 50.3
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 3.7e-80 302.8 383 51.4
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 4.9e-80 302.4 383 50.4
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 6.4e-80 302.0 384 50.3
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 8.3e-80 301.6 373 48.8
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 1.9e-79 300.4 435 46.9
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.6e-78 297.4 373 48.3
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.6e-78 297.4 375 50.9
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.7e-78 296.6 378 52.4
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 4.6e-78 295.8 377 48.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 3.0e-77 293.1 369 48.0
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 5.0e-77 292.4 395 47.1
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.1e-76 291.2 373 50.9
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.9e-76 290.4 403 44.7
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 3.3e-76 289.7 370 47.6
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 5.6e-76 288.9 377 51.7
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.6e-75 287.3 390 46.2
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.1e-75 287.0 379 49.1
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.1e-75 287.0 379 49.6
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.1e-75 287.0 375 49.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.8e-75 286.6 379 48.8
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.8e-75 286.6 365 51.0
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 6.2e-75 285.4 383 48.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 6.2e-75 285.4 379 49.6
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 8.1e-75 285.0 379 48.8
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.8e-74 283.9 403 46.9
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 2.3e-74 283.5 390 46.9
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 5.8e-73 278.9 345 52.2
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.7e-72 277.3 375 47.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 6.4e-72 275.4 399 45.1
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 9.2e-71 271.6 366 48.4
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 4.6e-70 269.2 383 46.5
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.3e-69 266.9 367 48.5
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 5.1e-69 265.8 367 47.4
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.1e-68 264.6 373 48.0
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.2e-67 261.2 387 46.0
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 3.6e-67 259.6 434 45.9
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 4.7e-67 259.2 424 46.5
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 2.9e-64 250.0 387 46.3
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 5.4e-63 245.7 266 55.3
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 2.3e-61 240.4 213 65.3
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.5e-60 237.7 383 44.4
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.5e-60 237.7 304 52.3
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.6e-59 233.0 285 53.0
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 8.1e-59 231.9 377 44.8
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 7.6e-57 225.3 351 45.3
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 3.2e-55 219.9 365 39.2
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.7e-54 216.9 364 44.2
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.7e-53 214.2 370 40.8
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 3.0e-53 213.4 307 48.2
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.3e-51 208.0 363 43.8
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.8e-50 204.1 289 46.7
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 9.9e-49 198.4 383 40.2
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.1e-47 194.9 193 58.0
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 5.4e-47 192.6 373 37.3
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.6e-46 191.0 373 40.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.6e-46 191.0 343 40.8
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 2.1e-46 190.7 190 56.8
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 5.1e-45 186.0 179 57.5
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.3e-44 183.3 187 57.2
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 3.1e-42 176.8 362 35.9
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 2.9e-40 170.2 127 61.4
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 7.1e-39 165.6 353 37.1
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 3.5e-38 163.3 186 52.2
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 3.0e-37 160.2 367 35.7
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 6.7e-37 159.1 364 33.0
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.6e-35 154.5 358 34.6
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 4.0e-34 149.8 119 69.7
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 6.5e-32 142.5 256 44.5
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 8.4e-32 142.1 372 35.8
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 3.0e-29 133.7 188 47.9
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 2.2e-24 117.5 143 52.4
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 4.2e-23 113.2 131 54.2
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.2e-17 95.1 164 36.0
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.5e-17 93.2 163 35.6
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 5.9e-17 92.8 358 32.1
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.0e-16 89.7 156 41.0
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.4e-15 88.2 150 39.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 5.5e-15 86.3 92 45.7
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.4e-15 85.5 163 35.0
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.8e-13 79.0 180 30.0
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.2e-11 72.4 158 31.0
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 9.1e-10 68.9 357 27.2
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.0e-08 65.5 83 53.0
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.0e-08 65.5 172 30.8
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.0e-08 65.5 172 30.8
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.0e-08 65.5 172 30.8
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.0e-08 65.5 172 30.8
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.0e-08 65.5 172 30.8
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.0e-08 65.5 177 29.9
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 2.2e-08 64.3 172 30.2
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 5.0e-08 63.2 172 30.2
PGSC0003DMG400015196 Solanum tuberosum HOM05D001735 ORTHO05D001640 3.2e-07 60.5 213 30.5
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 1.6e-06 58.2 244 25.8
Solyc03g111100.1 Solanum lycopersicum HOM05D001735 ORTHO05D001640 1.6e-06 58.2 173 32.4
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 2.7e-06 57.4 233 26.2
Dinv07827 Davidia involucrata HOM05D005715 ORTHO05D007160 6.1e-06 56.2 37 73.0
Sopen03g030250 Solanum pennellii HOM05D001735 ORTHO05D001640 7.9e-06 55.8 173 31.8


User provided reference genes

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