Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 1.8e-226 788.9 382 100.0
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 6.4e-168 594.3 379 76.3
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 5.4e-167 591.3 378 75.1
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 1.6e-166 589.7 378 74.6
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 2.7e-166 589.0 380 75.5
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 1.0e-165 587.0 378 74.1
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 1.5e-164 583.2 380 75.3
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 9.9e-161 570.5 376 73.1
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 4.2e-159 565.1 379 72.6
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 7.1e-159 564.3 379 72.6
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 7.1e-159 564.3 378 72.8
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 9.3e-159 563.9 379 72.6
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 1.2e-158 563.5 376 72.6
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 2.7e-158 562.4 379 72.3
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 6.6e-157 557.8 410 67.1
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 2.4e-154 549.3 379 69.9
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 6.9e-154 547.7 379 68.1
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 9.9e-153 543.9 376 68.9
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 1.8e-149 533.1 378 67.7
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 1.1e-148 530.4 379 68.9
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 1.5e-148 530.0 378 67.5
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 1.5e-148 530.0 356 72.2
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 1.9e-148 529.6 378 67.7
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.1e-147 526.2 378 65.9
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.1e-147 526.2 378 65.9
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 1.1e-146 523.9 379 67.8
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 4.0e-146 521.9 379 67.3
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 2.6e-145 519.2 375 67.7
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 3.4e-145 518.8 371 69.3
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 1.0e-144 517.3 375 67.2
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 4.9e-144 515.0 378 67.2
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 6.5e-144 514.6 377 66.3
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 8.4e-144 514.2 378 65.6
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 1.9e-143 513.1 379 64.1
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 4.2e-143 511.9 375 67.2
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 9.3e-143 510.8 377 65.0
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.2e-142 510.4 378 64.8
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 3.5e-142 508.8 425 61.2
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 6.0e-142 508.1 375 66.4
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 1.0e-141 507.3 397 62.7
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 1.3e-141 506.9 377 64.2
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 1.3e-141 506.9 377 64.7
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 2.3e-141 506.1 377 64.2
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 6.7e-141 504.6 381 63.5
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 4.3e-140 501.9 379 63.3
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 5.7e-140 501.5 376 66.8
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 9.6e-140 500.7 380 65.5
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 1.6e-139 500.0 381 63.5
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 1.6e-139 500.0 378 64.0
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 6.2e-139 498.0 374 66.0
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 1.4e-138 496.9 362 68.8
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 2.4e-138 496.1 377 65.3
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 3.1e-138 495.7 362 68.2
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 3.1e-138 495.7 373 64.6
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 6.9e-138 494.6 376 63.8
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 1.2e-137 493.8 379 63.9
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 3.4e-137 492.3 379 63.6
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 3.4e-137 492.3 379 63.9
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 5.8e-137 491.5 375 64.5
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.0e-136 490.7 374 63.4
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 6.5e-136 488.0 382 61.8
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 1.9e-135 486.5 379 63.1
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 5.5e-135 485.0 387 61.0
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 9.3e-135 484.2 374 63.9
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 1.2e-134 483.8 378 64.0
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 2.7e-134 482.6 379 64.4
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 4.6e-134 481.9 380 62.9
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 4.6e-134 481.9 380 62.9
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 6.1e-134 481.5 380 63.2
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 6.1e-134 481.5 353 67.7
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 1.8e-133 479.9 372 60.8
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 9.7e-132 474.2 381 63.8
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 3.7e-131 472.2 373 61.9
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 3.1e-130 469.2 375 60.8
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 4.5e-129 465.3 352 63.9
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 1.0e-128 464.2 357 62.2
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 2.9e-128 462.6 380 60.0
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 5.0e-128 461.8 375 59.7
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 2.3e-125 453.0 374 61.0
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 2.3e-125 453.0 374 60.7
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 3.0e-125 452.6 374 60.7
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 1.5e-124 450.3 376 59.3
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 6.9e-122 441.4 377 58.4
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 5.9e-121 438.3 304 70.7
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 7.7e-121 438.0 289 75.1
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 2.2e-120 436.4 401 56.4
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 3.8e-120 435.6 377 57.3
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 8.5e-120 434.5 372 56.7
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 4.7e-118 428.7 378 58.7
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 6.1e-118 428.3 374 57.8
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 1.4e-117 427.2 371 55.0
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 5.1e-117 425.2 340 64.1
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 1.1e-116 424.1 321 65.4
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 2.6e-116 422.9 303 68.3
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 4.4e-116 422.2 377 57.3
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 1.5e-113 413.7 325 62.2
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 5.9e-113 411.8 376 54.5
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 2.2e-112 409.8 377 53.3
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 1.6e-110 403.7 355 57.7
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 2.7e-110 402.9 375 56.3
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 2.6e-108 396.4 274 71.2
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 9.1e-106 387.9 305 62.3
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.4e-101 374.0 378 52.4
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 2.0e-100 370.2 395 51.4
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 2.0e-100 370.2 259 70.3
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 7.7e-97 358.2 254 66.1
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 3.8e-96 355.9 285 61.4
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 4.2e-87 325.9 225 69.8
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 1.2e-86 324.3 388 44.1
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 1.5e-84 317.4 380 44.5
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 1.0e-80 304.7 362 42.8
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 1.1e-79 301.2 217 66.8
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 2.8e-78 296.6 371 41.2
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 2.7e-65 253.4 184 66.3
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 1.1e-63 248.1 194 63.4
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 1.4e-58 231.1 388 31.7
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 3.2e-50 203.4 164 58.5
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 1.0e-40 171.8 150 56.7
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 3.7e-30 136.7 197 42.1
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 8.1e-30 135.6 114 57.9
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 4.5e-28 129.8 113 55.8
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 3.9e-24 116.7 93 66.7
Zm00001eb340150 Zea mays HOM05D006392 ORTHO05D008010 3.7e-14 83.6 77 53.2
ClCG05G018230 Citrullus lanatus HOM05D006392 ORTHO05D008010 8.2e-14 82.4 46 76.1
Cre09.g401367 Chlamydomonas reinhardtii HOM05D006392 ORTHO05D008010 1.4e-10 71.6 139 30.9


User provided reference genes

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