Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 2.1e-241 838.6 404 100.0
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 5.2e-168 594.7 405 71.9
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 1.8e-160 569.7 408 68.9
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 2.6e-159 565.8 408 68.4
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 1.8e-157 559.7 408 68.1
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 3.2e-157 558.9 414 67.1
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.6e-156 556.6 412 66.7
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 2.3e-155 552.7 414 67.6
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 3.9e-155 552.0 407 67.6
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 1.5e-154 550.1 419 65.6
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 3.6e-153 545.4 408 67.6
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 1.1e-152 543.9 411 65.7
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 5.8e-151 538.1 421 64.1
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 2.2e-150 536.2 409 67.5
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 2.7e-148 529.3 408 64.7
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 1.7e-147 526.6 407 64.6
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 1.7e-147 526.6 406 65.5
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 5.0e-147 525.0 410 64.6
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 1.5e-146 523.5 412 63.8
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 4.7e-145 518.5 538 52.8
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 1.1e-144 517.3 414 62.3
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 4.0e-144 515.4 422 62.1
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 5.2e-144 515.0 409 64.1
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 6.8e-144 514.6 420 62.6
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 1.5e-143 513.5 406 63.1
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 3.4e-143 512.3 409 61.1
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 7.5e-143 511.1 417 62.1
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 9.9e-143 510.8 409 63.1
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 2.9e-142 509.2 413 62.5
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 6.4e-142 508.1 416 62.0
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 8.3e-142 507.7 444 59.5
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 1.9e-141 506.5 413 61.5
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 2.4e-141 506.1 417 61.6
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 9.2e-141 504.2 422 60.9
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 1.2e-140 503.8 413 61.0
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 2.1e-140 503.1 409 61.6
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 2.7e-140 502.7 411 62.8
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 2.7e-140 502.7 413 63.2
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 1.3e-139 500.4 402 62.2
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 2.3e-139 499.6 425 58.1
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 6.6e-139 498.0 407 61.7
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 8.6e-139 497.7 409 61.9
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 2.5e-138 496.1 413 61.3
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 3.3e-138 495.7 411 60.1
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 3.3e-138 495.7 426 60.8
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 4.3e-138 495.4 405 61.5
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 4.3e-138 495.4 420 59.5
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 7.3e-138 494.6 409 60.1
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.6e-137 493.4 410 61.2
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 3.6e-137 492.3 429 59.2
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 4.7e-137 491.9 402 61.2
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 1.4e-136 490.3 425 60.2
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 3.1e-136 489.2 410 60.0
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 3.1e-136 489.2 405 62.2
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 4.0e-136 488.8 469 56.5
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 5.2e-136 488.4 411 60.8
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 5.8e-135 485.0 415 60.5
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 1.7e-134 483.4 420 59.0
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 3.8e-134 482.3 411 59.6
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 3.8e-134 482.3 419 59.9
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 4.9e-134 481.9 408 59.3
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.1e-133 480.7 452 55.8
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 3.2e-133 479.2 416 59.1
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.7e-131 473.4 437 57.9
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.7e-131 473.4 437 57.9
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 3.0e-131 472.6 400 61.0
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 5.1e-131 471.9 418 58.4
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 5.1e-131 471.9 415 58.6
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 8.6e-131 471.1 422 56.4
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 2.5e-130 469.5 322 71.7
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 2.8e-129 466.1 414 58.2
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 8.1e-129 464.5 429 55.7
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 3.1e-128 462.6 362 66.9
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 3.5e-124 449.1 428 56.5
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 1.5e-122 443.7 406 53.7
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 2.5e-122 443.0 358 62.0
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 3.4e-119 432.6 366 62.6
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 2.9e-118 429.5 418 54.8
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 1.4e-117 427.2 369 59.3
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 2.1e-116 423.3 377 58.1
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 2.1e-113 413.3 423 53.0
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 3.7e-113 412.5 327 63.6
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 6.9e-112 408.3 435 50.6
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 3.4e-111 406.0 427 52.2
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 3.8e-110 402.5 411 49.9
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 4.9e-110 402.1 400 51.8
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 2.4e-104 383.3 411 47.9
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 5.3e-104 382.1 372 54.3
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 9.0e-104 381.3 334 58.1
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 6.0e-100 368.6 350 57.1
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 1.1e-93 347.8 388 47.2
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 4.2e-93 345.9 430 44.7
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.4e-88 330.9 418 43.1
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.7e-86 323.9 326 53.7
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 4.7e-84 315.8 286 52.1
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 2.8e-81 306.6 345 49.9
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.0e-78 298.1 343 45.8
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 3.0e-67 260.0 307 46.9
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 5.3e-64 249.2 161 72.0
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 2.9e-62 243.4 218 60.6
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 1.2e-55 221.5 190 54.7
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 7.7e-55 218.8 392 34.4
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 2.3e-54 217.2 228 54.4
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 5.6e-45 186.0 223 43.0
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 9.8e-34 148.7 146 54.8
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 3.1e-27 127.1 159 49.7
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 2.0e-26 124.4 82 70.7
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 2.0e-26 124.4 164 50.0
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 2.2e-17 94.4 62 67.7
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 3.9e-14 83.6 195 29.7
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.4e-11 75.1 92 45.7
CDE01G0194 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 2.6e-10 70.9 47 72.3
BolC8t49566H Brassica oleracea HOM05D040593 ORTHO05D033422 8.7e-06 55.8 33 69.7


User provided reference genes

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