Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 5.1e-240 833.9 405 100.0
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 4.1e-157 558.5 423 67.6
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 5.0e-155 551.6 351 79.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 3.3e-154 548.9 429 66.0
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 6.8e-152 541.2 427 66.3
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 3.4e-151 538.9 346 75.7
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.2e-148 530.4 334 76.3
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 8.6e-147 524.2 327 76.8
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 2.1e-145 519.6 364 72.0
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 3.6e-145 518.8 428 63.6
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.4e-144 516.9 324 78.4
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 9.9e-143 510.8 356 72.2
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 1.7e-142 510.0 366 68.6
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.9e-141 506.5 329 75.7
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.4e-141 506.1 328 75.6
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.2e-140 503.8 328 74.7
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 2.1e-140 503.1 330 75.2
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 7.8e-140 501.1 348 69.8
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.7e-139 500.0 328 73.5
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 3.3e-138 495.7 344 70.1
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.8e-137 492.7 337 73.0
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.4e-136 490.3 322 74.2
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.8e-136 490.0 353 69.7
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 3.1e-136 489.2 430 60.5
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 4.0e-136 488.8 320 74.4
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 4.4e-135 485.3 344 69.8
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 1.3e-134 483.8 424 59.9
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.2e-134 483.0 335 71.0
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 2.2e-134 483.0 318 75.8
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 2.9e-134 482.6 317 73.8
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.4e-133 480.3 317 74.1
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 3.2e-133 479.2 333 71.5
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 4.2e-133 478.8 335 72.2
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.2e-133 478.8 417 60.4
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 7.1e-133 478.0 321 71.7
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 2.1e-132 476.5 331 70.4
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 4.6e-132 475.3 331 71.0
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.3e-131 473.8 328 72.3
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 3.0e-131 472.6 326 72.1
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.0e-131 472.6 431 58.7
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.6e-131 471.5 332 69.6
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.1e-130 470.7 344 68.3
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.9e-130 469.9 329 71.4
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.9e-130 469.9 339 69.6
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.5e-130 469.5 329 69.6
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 2.5e-130 469.5 321 72.3
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 4.3e-130 468.8 349 68.8
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 5.6e-130 468.4 353 66.9
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 7.3e-130 468.0 397 63.2
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 7.3e-130 468.0 344 69.5
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.6e-130 467.6 330 68.8
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 2.8e-129 466.1 336 68.8
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 4.8e-129 465.3 338 68.3
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 6.2e-129 464.9 307 74.3
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 8.1e-129 464.5 326 70.9
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.8e-128 463.4 374 64.7
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.8e-128 463.4 318 72.0
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 9.0e-128 461.1 319 71.5
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 9.0e-128 461.1 352 66.2
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 9.0e-128 461.1 352 66.2
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.5e-127 460.3 352 66.2
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 2.0e-127 459.9 259 83.8
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 9.9e-127 457.6 334 68.9
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.9e-126 456.1 353 64.9
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.4e-126 454.9 322 69.3
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.9e-125 453.4 324 69.8
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.2e-124 450.7 330 69.7
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 6.0e-124 448.4 323 70.3
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.0e-123 447.6 345 65.8
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.8e-123 446.8 360 64.7
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.3e-121 440.7 316 71.2
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 4.8e-121 438.7 347 62.8
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 8.1e-121 438.0 327 65.7
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.4e-120 437.2 315 66.7
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.4e-120 437.2 323 68.7
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.8e-120 436.8 399 55.9
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.8e-120 436.8 367 63.2
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 3.1e-120 436.0 344 63.4
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 9.9e-119 431.0 321 65.1
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.2e-118 429.9 246 82.5
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.9e-118 429.5 325 65.5
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.1e-117 427.6 327 64.8
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.2e-116 424.1 354 63.3
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 1.1e-112 411.0 326 63.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 9.0e-112 407.9 342 61.4
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.2e-110 403.3 317 65.3
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.1e-106 391.0 317 61.5
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.3e-105 385.2 318 63.2
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.8e-104 383.6 263 69.6
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 5.3e-104 382.1 385 53.0
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.0e-102 377.9 321 62.3
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 7.2e-101 371.7 319 57.4
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 9.4e-101 371.3 231 74.5
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.3e-98 362.5 226 75.7
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 4.8e-97 359.0 462 48.7
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 6.3e-97 358.6 192 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 4.7e-92 342.4 355 51.5
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 7.9e-92 341.7 248 67.3
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 4.1e-88 329.3 193 81.3
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.4e-83 314.3 278 54.7
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.4e-83 314.3 280 55.7
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 2.7e-76 290.0 359 44.0
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 5.7e-74 282.3 303 46.9
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 5.0e-70 269.2 196 60.7
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.8e-67 260.8 225 56.0
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.6e-66 256.9 288 50.0
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.6e-63 247.7 296 48.6
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 4.7e-60 236.1 123 86.2
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 4.9e-57 226.1 125 76.8
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 3.5e-55 219.9 185 61.6
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 2.1e-52 210.7 114 89.5
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 8.9e-51 205.3 177 59.9
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 1.6e-47 194.5 112 84.8
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.2e-40 168.7 173 56.1
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 3.5e-39 166.8 263 40.7
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 7.3e-37 159.1 99 73.7
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 6.8e-35 152.5 173 53.2
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 4.9e-33 146.4 182 42.3
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.3e-30 137.5 280 37.5
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 7.3e-29 132.5 230 40.0
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 2.4e-27 127.5 62 87.1
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 4.4e-26 123.2 73 79.5
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.8e-25 120.2 98 65.3
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.4e-24 117.5 299 27.1
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.3e-22 111.7 61 91.8
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 3.0e-22 110.5 249 36.9
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 5.1e-22 109.8 63 87.3
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.9e-21 107.8 55 78.2
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 9.6e-21 105.5 190 40.5
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.1e-19 100.5 80 61.2
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 1.0e-14 85.5 102 47.1
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.3e-14 85.1 200 33.5
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-14 84.7 57 77.2
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 3.9e-14 83.6 114 44.7
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 9.0e-11 72.4 111 42.3
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 8.4e-09 65.9 39 79.5


User provided reference genes

Program Settings