Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.0e-219 766.5 409 100.0
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 3.8e-166 588.6 419 78.3
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 4.6e-164 581.6 413 78.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 8.7e-163 577.4 416 76.7
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.9e-162 576.2 424 75.9
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.1e-160 570.5 416 75.7
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.9e-160 567.8 407 76.9
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.9e-157 559.7 422 73.5
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.6e-156 556.6 421 74.6
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.1e-156 556.2 432 75.2
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 7.9e-156 554.3 416 74.8
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 8.7e-155 550.8 424 72.9
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.9e-154 549.7 417 73.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.3e-154 548.9 415 73.7
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 3.7e-153 545.4 431 70.5
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 6.2e-153 544.7 414 72.5
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 8.1e-153 544.3 427 73.1
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.4e-152 542.7 423 72.6
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.9e-152 541.2 423 71.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 9.0e-152 540.8 418 72.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.5e-151 540.0 423 72.3
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.0e-151 539.7 423 70.9
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.6e-151 539.3 422 72.5
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.8e-151 538.1 423 72.1
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 7.6e-151 537.7 415 73.3
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 5.5e-149 531.6 420 71.7
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 4.6e-148 528.5 416 69.5
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 3.0e-147 525.8 419 70.9
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 6.7e-147 524.6 446 67.0
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.9e-146 523.1 419 72.1
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 5.6e-146 521.5 412 72.6
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 7.4e-146 521.2 410 72.7
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.4e-146 521.2 423 70.0
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.8e-145 519.2 415 71.6
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 9.0e-144 514.2 418 69.6
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.5e-143 513.5 425 70.4
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 5.8e-143 511.5 419 70.2
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.7e-142 510.0 443 67.3
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 2.2e-142 509.6 420 69.0
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 3.8e-142 508.8 419 69.0
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 4.2e-141 505.4 471 63.3
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 4.2e-141 505.4 419 69.2
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.1e-140 503.1 422 67.1
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 2.1e-140 503.1 419 69.2
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.0e-139 500.7 367 76.0
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.0e-139 500.7 416 70.0
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.1e-138 497.3 423 68.1
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 9.7e-138 494.2 407 68.8
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 3.7e-137 492.3 413 69.0
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 1.4e-136 490.3 409 68.2
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 2.0e-135 486.5 428 66.8
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.7e-134 483.4 414 68.1
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.4e-133 480.3 407 69.0
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 9.4e-133 477.6 491 59.7
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 2.7e-132 476.1 399 69.4
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 3.6e-132 475.7 416 65.9
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.0e-131 474.2 454 62.3
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 3.9e-131 472.2 422 65.9
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 6.7e-131 471.5 394 69.0
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-130 470.3 409 67.0
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 3.3e-130 469.2 420 66.2
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.3e-130 469.2 429 66.9
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 6.3e-129 464.9 419 66.1
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.0e-126 457.6 415 62.7
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.9e-125 453.4 423 63.1
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 4.2e-125 452.2 418 63.2
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.2e-124 450.7 417 65.2
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 3.6e-124 449.1 421 63.2
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.6e-124 449.1 371 69.8
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 2.0e-122 443.4 433 58.9
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 7.4e-122 441.4 429 61.8
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.1e-120 437.6 426 60.1
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.4e-120 437.2 422 58.5
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.4e-120 436.4 414 63.8
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-119 434.1 418 61.7
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.2e-119 434.1 394 65.0
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.5e-119 433.7 417 60.7
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.5e-119 433.7 284 80.6
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.5e-119 432.6 417 60.4
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 5.9e-119 431.8 408 63.5
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 7.7e-119 431.4 417 62.6
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 5.5e-117 425.2 458 57.2
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 9.4e-117 424.5 416 61.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.6e-116 423.7 366 65.8
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.1e-116 423.3 416 61.3
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 3.6e-116 422.5 417 62.4
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.0e-115 421.0 393 64.1
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.8e-115 420.2 388 64.2
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.8e-115 420.2 388 64.2
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 5.2e-115 418.7 415 60.5
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 6.7e-115 418.3 414 62.3
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.1e-114 417.5 410 62.7
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.1e-114 417.5 422 60.7
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.1e-114 417.5 403 62.8
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 5.3e-112 408.7 411 60.6
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.9e-111 405.2 420 60.2
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.0e-110 404.4 416 58.9
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.5e-109 400.6 394 59.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 2.7e-108 396.4 420 57.6
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 2.6e-106 389.8 426 58.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 9.7e-106 387.9 411 57.9
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 4.1e-104 382.5 370 60.5
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.7e-103 378.3 356 60.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.0e-102 377.9 292 73.3
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 9.8e-98 361.3 437 53.3
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.7e-97 360.5 417 55.9
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 2.8e-97 359.8 311 67.2
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 4.8e-97 359.0 405 57.3
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 3.8e-94 349.4 414 52.2
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 8.9e-91 338.2 428 52.3
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 2.4e-88 330.1 257 72.8
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 2.3e-83 313.5 257 69.3
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 2.6e-82 310.1 289 64.7
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.3e-81 307.8 321 58.6
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.1e-80 304.7 270 66.3
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 4.6e-79 299.3 333 54.1
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 2.8e-76 290.0 272 63.2
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.4e-72 277.7 267 65.2
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 7.8e-71 271.9 261 65.1
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 3.0e-70 270.0 267 61.4
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 4.3e-69 266.2 269 61.3
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.2e-68 262.3 267 59.6
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.1e-67 261.5 264 59.5
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 5.2e-67 259.2 416 44.7
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 5.2e-67 259.2 194 74.7
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.9e-64 250.8 423 44.4
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.3e-62 243.8 263 55.1
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.3e-61 240.0 336 48.8
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.7e-54 217.6 256 55.1
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.3e-54 217.2 452 38.3
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.3e-53 213.0 463 38.2
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 2.1e-52 210.7 260 53.5
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.4e-51 208.0 136 80.1
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.2e-50 204.9 135 80.0
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 3.4e-50 203.4 182 66.5
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 9.9e-50 201.8 196 60.2
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.7e-49 201.1 181 61.9
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.1e-45 188.3 404 39.9
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.5e-45 188.0 125 80.0
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 6.9e-43 179.1 134 69.4
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.0e-39 166.0 143 65.7
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.6e-36 157.9 192 52.6
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 2.5e-29 134.0 141 56.0
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 3.9e-22 110.2 130 56.9
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 6.7e-22 109.4 215 43.7
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.8e-14 84.7 177 39.0
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 7.9e-07 59.3 108 39.8
BolC8t48089H Brassica oleracea HOM05D019496 ORTHO05D019976 1.8e-06 58.2 108 39.8
C05p47770 Brassica napus HOM05D019496 ORTHO05D019976 2.3e-06 57.8 95 41.1
BcaC02g09385 Brassica carinata HOM05D019496 ORTHO05D019976 6.7e-06 56.2 76 48.7
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 6.7e-06 56.2 81 43.2
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 8.8e-06 55.8 35 68.6


User provided reference genes

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