Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 6.9e-232 807.0 418 100.0
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.6e-135 486.9 375 65.9
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.6e-127 460.3 428 57.0
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 3.0e-126 456.1 426 56.3
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.1e-125 454.1 429 57.1
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 2.5e-125 453.0 425 56.5
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.1e-123 447.6 427 55.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 4.0e-123 445.7 420 57.6
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 6.4e-121 438.3 427 55.7
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 1.1e-120 437.6 423 56.3
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 4.2e-120 435.6 426 54.7
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.6e-119 433.7 428 54.0
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 7.9e-119 431.4 427 54.6
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 1.8e-118 430.3 426 53.8
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 1.3e-113 414.1 426 53.5
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.2e-113 413.3 426 51.6
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 5.5e-112 408.7 424 50.9
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.0e-110 404.4 426 49.5
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 5.1e-110 402.1 420 51.4
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 6.7e-110 401.7 446 51.8
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.1e-109 401.0 422 52.8
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 3.3e-109 399.4 421 51.8
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 4.8e-108 395.6 375 55.7
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.5e-106 390.6 427 48.9
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 8.4e-105 384.8 428 51.4
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.2e-103 380.9 392 54.3
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 2.7e-103 379.8 427 47.8
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 7.9e-103 378.3 427 50.8
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 2.3e-102 376.7 407 50.4
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 3.9e-102 375.9 408 52.7
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 4.3e-101 372.5 426 47.9
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 5.7e-101 372.1 428 48.1
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 5.7e-101 372.1 438 50.7
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 7.4e-101 371.7 423 50.8
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.3e-100 370.9 421 49.2
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.6e-100 370.5 421 49.2
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.8e-100 369.8 426 48.1
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 2.8e-100 369.8 426 50.7
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.8e-99 367.1 439 49.9
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.1e-99 366.3 424 47.2
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 3.1e-99 366.3 428 47.0
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 5.3e-99 365.5 422 46.9
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 9.0e-99 364.8 424 47.2
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.5e-98 364.0 421 48.7
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.4e-98 362.8 399 51.9
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.3e-97 360.9 426 46.2
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 2.2e-97 360.1 422 47.2
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 5.0e-97 359.0 424 46.7
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 7.2e-96 355.1 426 45.5
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.7e-95 353.2 427 45.7
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.7e-95 353.2 421 45.1
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 7.9e-95 351.7 407 48.4
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.0e-94 351.3 429 46.4
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.3e-94 350.9 424 45.8
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 3.0e-94 349.7 392 49.2
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 3.9e-94 349.4 427 46.1
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.5e-93 347.4 426 46.2
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.9e-93 347.1 424 45.5
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.9e-93 347.1 428 45.8
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 2.5e-93 346.7 426 44.4
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.3e-92 344.4 426 46.5
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.2e-92 343.6 426 46.9
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 6.3e-92 342.0 427 47.3
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 1.8e-91 340.5 432 45.6
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.1e-91 339.3 415 47.2
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 5.3e-91 339.0 415 45.8
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 6.9e-91 338.6 432 45.4
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 1.2e-90 337.8 365 50.7
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 2.6e-90 336.7 408 46.8
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 3.8e-89 332.8 432 44.7
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.8e-89 332.8 407 48.2
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.9e-88 330.5 392 49.0
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 2.5e-88 330.1 412 47.3
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.5e-88 330.1 374 47.9
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 2.5e-88 330.1 423 44.4
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.2e-88 329.3 427 46.6
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 5.5e-88 328.9 391 47.3
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.5e-88 328.9 422 45.3
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.5e-88 328.9 423 44.2
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 9.4e-88 328.2 424 45.0
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.6e-87 326.2 427 44.3
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 7.9e-87 325.1 424 44.1
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.8e-86 323.9 392 48.2
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 1.8e-86 323.9 430 42.6
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 2.0e-85 320.5 390 44.9
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 3.3e-85 319.7 422 46.4
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.1e-83 312.8 423 43.5
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-82 310.5 377 49.9
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 2.0e-82 310.5 466 41.8
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 5.9e-82 308.9 463 41.9
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.7e-82 308.5 416 43.5
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 2.2e-81 307.0 386 45.1
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 2.9e-81 306.6 330 50.6
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 2.9e-81 306.6 420 42.6
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 5.0e-81 305.8 407 45.5
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 7.2e-80 302.0 420 42.9
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.2e-79 301.2 392 46.4
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 4.7e-79 299.3 418 43.1
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 4.7e-79 299.3 369 48.0
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 6.1e-79 298.9 427 40.5
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 2.0e-77 293.9 395 42.0
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 4.4e-77 292.7 423 43.5
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 5.7e-77 292.4 429 42.2
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.0e-73 281.6 374 43.6
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 4.8e-68 262.7 416 41.3
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 4.8e-68 262.7 343 45.5
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 5.0e-65 252.7 432 38.2
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.5e-64 250.4 419 38.9
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.7e-60 236.5 418 37.1
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 8.3e-60 235.3 418 36.6
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 3.5e-58 229.9 380 37.6
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.2e-55 221.5 355 38.0
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.6e-55 219.9 212 55.2
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.3e-44 184.9 260 44.2
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.6e-42 177.9 152 57.9
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.7e-42 177.2 419 29.4
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 1.5e-40 171.4 342 34.5
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 5.6e-40 169.5 189 48.1
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 2.1e-39 167.5 430 31.6
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 2.6e-37 160.6 435 30.1
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 5.8e-37 159.5 441 30.8
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.3e-36 158.3 207 43.0
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.2e-36 157.5 433 29.8
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.5e-32 144.1 436 29.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 8.9e-30 135.6 450 28.0
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.5e-29 134.8 483 28.8
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 4.4e-29 133.3 422 27.5
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 6.0e-26 122.9 404 26.0
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.9e-25 120.2 435 28.0
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.2e-21 108.6 214 34.1
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 5.4e-19 99.8 143 39.2
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.3e-16 90.5 286 28.7
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 2.8e-15 87.4 84 48.8
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.2e-15 86.3 246 28.9
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-13 79.3 215 30.2
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 1.1e-11 75.5 54 61.1
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 4.3e-08 63.5 74 45.9
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 4.8e-07 60.1 76 43.4
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.3e-06 56.6 71 46.5


User provided reference genes

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