Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 6.2e-233 810.4 418 100.0
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 2.9e-190 668.7 419 80.2
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 2.9e-190 668.7 419 80.2
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 3.1e-184 648.7 418 77.3
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.2e-178 630.2 418 78.7
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 1.5e-178 629.8 418 75.4
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 9.8e-178 627.1 418 75.8
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.3e-177 626.7 420 76.0
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.2e-177 625.9 418 75.8
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 3.7e-177 625.2 409 77.0
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.4e-176 623.2 418 75.8
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 3.1e-176 622.1 419 75.4
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 5.0e-174 614.8 410 76.1
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 4.2e-173 611.7 418 73.0
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.2e-173 611.7 423 73.3
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.6e-172 609.8 455 69.9
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 3.6e-172 608.6 418 73.4
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 6.1e-172 607.8 345 82.3
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 8.0e-172 607.4 416 73.3
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 4.4e-170 601.7 411 74.2
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.3e-169 600.1 418 72.5
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.9e-169 598.2 421 72.4
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 6.3e-169 597.8 421 72.4
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.1e-168 597.0 421 72.2
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.1e-168 597.0 417 72.9
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.0e-167 592.8 420 72.9
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 2.0e-167 592.8 417 71.2
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 2.0e-167 592.8 442 69.2
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 4.5e-167 591.7 413 72.2
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 1.7e-166 589.7 419 71.1
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 2.3e-166 589.3 409 71.6
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 2.3e-166 589.3 416 70.7
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 3.8e-166 588.6 418 72.5
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 3.8e-166 588.6 362 79.0
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 6.6e-166 587.8 412 71.8
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.1e-165 587.0 341 82.1
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.9e-165 586.3 417 70.5
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.9e-165 586.3 417 70.5
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 2.5e-165 585.9 413 70.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.3e-165 585.5 347 81.0
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 3.3e-165 585.5 382 76.7
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 4.3e-165 585.1 421 69.4
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 4.3e-165 585.1 409 71.1
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 7.3e-165 584.3 378 75.9
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 7.3e-165 584.3 423 69.5
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 9.5e-165 583.9 333 83.2
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.2e-164 583.6 448 68.1
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.1e-164 582.8 417 70.0
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-164 582.8 416 70.7
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.1e-164 582.8 400 71.8
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 2.8e-164 582.4 408 70.1
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 2.8e-164 582.4 342 79.8
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 2.8e-164 582.4 411 70.8
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 6.1e-164 581.3 408 71.1
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 8.0e-164 580.9 423 70.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 8.0e-164 580.9 432 69.7
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.4e-163 580.1 339 80.5
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 2.3e-163 579.3 346 79.2
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 5.2e-163 578.2 412 70.9
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 5.2e-163 578.2 413 70.5
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-163 577.8 416 70.2
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 6.8e-163 577.8 418 69.4
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 6.8e-163 577.8 341 79.5
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 8.9e-163 577.4 418 69.9
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 8.9e-163 577.4 340 80.3
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.2e-162 577.0 348 79.6
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 2.6e-162 575.9 419 70.2
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 2.6e-162 575.9 334 81.1
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 2.6e-162 575.9 410 70.5
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 3.4e-162 575.5 422 69.7
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 4.4e-162 575.1 347 77.8
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 7.5e-162 574.3 413 70.7
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 9.8e-162 573.9 420 68.8
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.7e-161 573.2 347 79.8
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.7e-161 573.2 412 71.8
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 1.7e-161 573.2 348 80.5
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.7e-161 573.2 412 70.9
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 2.2e-161 572.8 418 71.5
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 2.9e-161 572.4 423 68.6
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.9e-161 571.6 399 70.2
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 6.4e-161 571.2 436 66.7
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-160 570.5 342 79.5
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.4e-160 570.1 412 70.9
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.4e-160 569.3 344 78.5
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 4.1e-160 568.5 383 74.4
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 7.0e-160 567.8 342 78.1
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.6e-159 566.6 342 78.4
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 2.0e-159 566.2 408 68.6
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 2.7e-159 565.8 333 79.3
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 3.5e-159 565.5 416 68.3
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.0e-158 563.9 417 68.6
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.0e-158 563.9 412 68.4
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-158 563.5 347 74.9
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.9e-157 559.7 400 70.0
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 2.5e-157 559.3 337 79.5
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 5.6e-157 558.1 429 67.4
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 5.6e-157 558.1 429 67.4
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-156 557.0 408 67.9
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 3.6e-156 555.4 400 69.8
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 8.0e-156 554.3 333 76.0
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.4e-155 553.5 429 66.9
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 6.8e-155 551.2 336 78.9
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 2.2e-153 546.2 417 66.9
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 2.9e-153 545.8 340 75.9
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 8.3e-153 544.3 405 67.7
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.4e-152 543.5 298 86.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 4.6e-151 538.5 339 74.9
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.7e-150 536.6 328 75.0
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 1.1e-149 533.9 381 70.6
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.5e-149 532.7 336 73.8
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 9.5e-149 530.8 381 70.3
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 3.6e-148 528.9 350 74.0
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-147 525.4 416 66.8
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 4.9e-145 518.5 283 85.9
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 9.2e-144 514.2 298 80.5
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 7.8e-143 511.1 417 64.0
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.5e-141 506.9 332 72.9
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.2e-140 503.8 333 70.3
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 6.2e-140 501.5 325 74.2
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.7e-137 493.4 337 68.2
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.0e-134 484.2 331 67.7
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-133 479.6 279 79.9
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.8e-131 473.4 350 70.3
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 5.2e-131 471.9 332 66.9
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 3.8e-129 465.7 327 70.3
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 4.9e-129 465.3 449 58.1
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 4.3e-125 452.2 340 62.6
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.6e-114 416.4 346 65.6
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 5.8e-114 415.2 353 60.3
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.2e-113 413.3 329 59.0
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.9e-112 410.2 263 75.3
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.3e-105 387.5 297 62.0
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.3e-102 377.5 282 61.7
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.5e-101 373.2 274 69.7
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.0e-86 324.7 258 68.2
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.8e-86 323.9 188 81.4
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.3e-85 319.7 259 64.5
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-82 310.8 303 55.1
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.2e-74 284.6 157 83.4
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 5.5e-72 275.8 409 42.1
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 5.2e-70 269.2 275 53.8
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 2.7e-63 246.9 143 78.3
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 6.3e-60 235.7 307 45.3
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.1e-55 219.2 260 49.2
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-54 218.0 235 51.5
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-49 200.3 324 40.4
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-46 189.1 132 70.5
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.8e-45 186.0 196 56.1
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 9.2e-43 178.7 116 74.1
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 7.8e-42 175.6 196 55.1
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 7.8e-42 175.6 196 55.1
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 6.2e-39 166.0 122 70.5
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 2.1e-31 141.0 235 39.6
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 8.3e-28 129.0 159 49.1
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 8.3e-28 129.0 159 49.1
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 4.9e-20 103.2 169 37.9
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 2.7e-18 97.4 53 79.2
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 2.7e-18 97.4 53 79.2
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-11 74.7 51 68.6
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 9.6e-08 62.4 47 55.3
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-07 62.0 39 71.8
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 3.6e-07 60.5 44 63.6
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 4.8e-07 60.1 56 51.8
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 4.8e-07 60.1 56 51.8
SGA_v2.0_scaffold80G25734 Striga asiatica HOM05D040281 ORTHO05D035895 9.0e-06 55.8 53 52.8


User provided reference genes

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