Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 1.3e-233 812.8 436 100.0
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 9.5e-200 700.3 439 87.0
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 4.7e-199 698.0 461 82.2
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 4.0e-198 694.9 438 80.4
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 8.9e-198 693.7 439 80.2
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 3.7e-196 688.3 437 82.2
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 8.3e-196 687.2 439 82.0
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 3.1e-195 685.3 438 81.3
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 3.1e-195 685.3 441 80.0
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.0e-194 682.6 438 81.7
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.3e-193 679.9 438 81.3
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 1.3e-193 679.9 438 81.3
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.7e-193 679.5 437 80.5
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 6.6e-193 677.6 441 84.8
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 8.6e-193 677.2 438 80.8
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.1e-192 676.8 449 83.3
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 1.9e-192 676.0 438 83.8
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 2.5e-192 675.6 441 83.7
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 5.6e-192 674.5 446 77.4
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 5.6e-192 674.5 438 80.6
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 9.5e-192 673.7 438 84.7
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 9.5e-192 673.7 437 78.9
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.6e-191 672.9 434 78.1
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 3.6e-191 671.8 442 84.2
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 4.7e-191 671.4 434 80.2
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 4.7e-191 671.4 438 83.6
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 6.1e-191 671.0 433 79.7
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 3.1e-190 668.7 434 77.6
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.5e-189 666.4 441 78.5
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 2.6e-189 665.6 438 77.2
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 2.6e-189 665.6 437 82.2
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 3.4e-189 665.2 436 83.3
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 5.8e-189 664.5 437 78.0
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 5.8e-189 664.5 437 78.0
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 7.5e-189 664.1 438 78.5
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 2.2e-188 662.5 437 77.8
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 2.2e-188 662.5 438 84.0
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 6.4e-188 661.0 438 79.0
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 8.3e-188 660.6 438 78.1
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 8.3e-188 660.6 436 83.7
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 1.4e-187 659.8 439 78.6
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.9e-187 659.4 437 79.4
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 2.4e-187 659.1 436 78.0
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 5.4e-187 657.9 440 77.7
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 5.4e-187 657.9 441 81.0
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.0e-185 653.7 434 76.7
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.9e-185 651.7 440 76.1
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 3.9e-185 651.7 441 76.9
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 5.0e-185 651.4 441 78.7
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 1.5e-184 649.8 420 84.5
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.9e-184 649.4 441 76.4
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 4.3e-184 648.3 442 75.3
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 7.3e-184 647.5 431 77.0
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 2.1e-183 646.0 416 80.8
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 2.8e-183 645.6 377 87.5
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 3.6e-183 645.2 418 80.1
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 6.2e-183 644.4 414 80.9
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 1.1e-182 643.7 385 83.6
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 3.1e-182 642.1 381 86.1
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 8.9e-182 640.6 439 77.7
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 1.5e-181 639.8 392 85.5
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 9.8e-181 637.1 443 76.7
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.7e-180 636.3 444 76.6
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 2.9e-180 635.6 439 79.7
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 2.9e-180 635.6 416 80.5
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 4.9e-180 634.8 444 76.4
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 7.0e-179 630.9 426 76.5
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 1.2e-178 630.2 418 80.1
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 3.5e-178 628.6 438 77.6
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 6.0e-178 627.9 439 79.3
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 7.8e-178 627.5 434 77.2
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 1.0e-177 627.1 439 78.8
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.3e-177 625.9 416 83.7
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 2.3e-177 625.9 438 79.7
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.1e-176 623.6 416 83.2
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.9e-176 622.9 423 76.1
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 2.5e-176 622.5 437 78.5
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 3.3e-176 622.1 414 83.1
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.3e-176 622.1 414 83.1
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 3.3e-176 622.1 416 83.4
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 4.3e-176 621.7 393 82.4
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 4.3e-176 621.7 419 78.3
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 5.6e-176 621.3 446 74.7
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 7.3e-176 620.9 372 90.1
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 9.5e-176 620.5 371 90.0
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.2e-175 620.2 438 76.5
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 4.7e-175 618.2 420 80.0
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.4e-174 616.7 371 89.5
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 4.0e-174 615.1 455 71.4
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.0e-174 615.1 416 76.9
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 6.8e-174 614.4 435 78.2
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 8.9e-174 614.0 451 73.8
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 7.5e-173 610.9 436 72.2
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 2.7e-170 602.4 409 79.7
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 4.6e-170 601.7 329 89.4
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 3.6e-167 592.0 328 87.2
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 6.4e-164 581.3 365 80.3
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 1.4e-163 580.1 424 76.9
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 1.9e-163 579.7 424 76.9
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.6e-162 576.6 432 69.9
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 2.1e-162 576.2 437 69.3
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 2.5e-160 569.3 443 71.8
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 4.3e-160 568.5 322 86.0
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 5.6e-160 568.2 437 73.5
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 2.6e-157 559.3 412 71.4
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 7.6e-157 557.8 374 75.1
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.3e-156 557.0 367 74.9
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.4e-155 553.5 438 66.4
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 2.4e-155 552.7 406 69.5
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 5.4e-155 551.6 391 77.7
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.3e-153 547.0 367 73.8
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 5.1e-153 545.0 367 73.3
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.1e-151 539.7 367 72.8
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 4.8e-143 511.9 290 86.6
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.9e-139 500.0 383 72.1
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.5e-139 499.6 370 70.0
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 6.7e-137 491.5 434 59.9
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 1.1e-136 490.7 358 77.9
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 3.3e-136 489.2 440 58.9
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 3.3e-136 489.2 385 66.2
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 7.4e-136 488.0 436 60.1
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 7.4e-136 488.0 436 60.1
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 2.4e-134 483.0 436 59.9
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-133 480.7 328 72.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.4e-133 479.2 442 61.1
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 7.6e-133 478.0 434 59.7
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 1.0e-132 477.6 434 59.7
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 1.0e-132 477.6 434 59.7
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 1.3e-129 467.2 328 71.3
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 8.7e-129 464.5 328 70.7
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 4.8e-127 458.8 443 63.4
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 2.9e-124 449.5 341 71.3
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.4e-118 430.6 324 70.4
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 3.2e-115 419.5 336 61.6
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 4.7e-114 415.6 331 62.2
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 2.3e-113 413.3 319 65.5
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 4.1e-110 402.5 289 69.9
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.0e-109 400.2 358 63.4
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 9.4e-107 391.3 231 86.1
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 3.3e-104 382.9 331 65.0
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 5.0e-84 315.8 231 74.5
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.5e-75 287.7 241 64.3
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.7e-69 266.9 193 71.5
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 6.6e-68 262.3 226 60.6
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.9e-60 236.5 298 48.0
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.8e-57 227.6 279 46.2
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 5.4e-54 216.1 211 54.5
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 7.8e-53 212.2 130 76.2
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 7.3e-51 205.7 190 56.3
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.3e-47 194.9 318 38.4
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.4e-46 191.4 155 67.1
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 2.4e-46 190.7 173 57.8
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 8.7e-44 182.2 108 80.6
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.3e-43 180.3 100 89.0
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 8.1e-42 175.6 108 77.8
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 4.0e-41 173.3 111 78.4
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 9.0e-41 172.2 169 53.8
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 1.4e-38 164.9 169 60.4
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 4.2e-38 163.3 169 53.3
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.6e-37 161.4 107 73.8
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 3.3e-35 153.7 122 67.2
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 4.8e-34 149.8 182 44.0
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 4.8e-34 149.8 76 88.2
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 8.1e-34 149.1 135 61.5
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.4e-33 147.5 84 81.0
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.0e-25 120.2 72 81.9
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.4e-22 111.7 74 75.7
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 1.9e-19 101.3 113 51.3
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 1.2e-16 92.0 187 36.4
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 7.9e-13 79.3 49 77.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 5.1e-12 76.6 53 66.0
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.7e-10 70.5 73 53.4
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 6.3e-10 69.7 77 53.2
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 6.3e-10 69.7 77 53.2
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.1e-09 67.4 36 88.9
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 5.9e-08 63.2 40 77.5


User provided reference genes

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