Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 4.6e-258 894.0 451 100.0
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 2.1e-194 682.6 452 77.4
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 2.6e-184 649.0 452 72.8
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 7.0e-182 641.0 450 71.8
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.2e-181 640.2 452 72.1
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.6e-181 639.8 453 73.3
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 5.0e-180 634.8 459 72.5
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 3.6e-178 628.6 447 73.4
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 4.7e-178 628.2 447 73.8
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 4.0e-177 625.2 456 71.1
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 2.0e-176 622.9 454 71.8
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 3.4e-176 622.1 456 70.8
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 1.9e-174 616.3 455 70.5
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 3.2e-174 615.5 448 71.7
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.3e-172 610.1 448 70.8
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 1.7e-172 609.8 427 72.6
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 5.1e-172 608.2 453 71.1
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 6.6e-172 607.8 452 69.9
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 8.6e-172 607.4 452 69.9
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 5.6e-171 604.7 453 69.8
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 7.3e-171 604.4 452 69.5
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 1.6e-170 603.2 455 69.7
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 3.6e-170 602.1 450 69.8
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 1.1e-169 600.5 453 70.4
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.8e-169 599.7 452 70.1
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 4.0e-169 598.6 450 68.7
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 2.6e-168 595.9 450 69.6
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 3.4e-168 595.5 452 69.9
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 3.4e-168 595.5 488 66.0
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 6.0e-165 584.7 452 67.0
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 3.9e-164 582.0 446 69.1
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 5.1e-164 581.6 446 68.8
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.5e-163 580.1 453 67.3
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.5e-163 580.1 452 66.6
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 5.6e-163 578.2 447 67.8
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.2e-162 577.0 472 65.0
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 1.2e-162 577.0 450 66.9
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 1.2e-162 577.0 446 67.9
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 1.2e-162 577.0 446 68.2
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.6e-162 576.6 453 68.7
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 2.8e-162 575.9 476 64.1
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-161 573.5 452 66.4
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 1.4e-161 573.5 452 64.6
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 3.1e-161 572.4 405 73.3
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 6.9e-161 571.2 452 65.9
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.5e-160 570.1 454 67.4
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 7.6e-160 567.8 449 67.0
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 1.3e-159 567.0 446 67.7
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 4.9e-159 565.1 455 66.4
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.1e-158 563.9 436 67.0
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 1.4e-158 563.5 342 82.7
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.9e-158 563.1 448 65.6
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 2.4e-158 562.8 436 67.0
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 9.3e-158 560.8 446 66.1
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 9.3e-158 560.8 454 67.6
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.6e-157 560.1 447 65.8
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 6.6e-156 554.7 459 66.2
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 1.5e-155 553.5 448 65.4
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 2.5e-155 552.7 453 65.3
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 4.3e-155 552.0 448 64.1
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 7.3e-155 551.2 450 64.4
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 7.3e-155 551.2 452 64.2
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 2.1e-154 549.7 455 64.0
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 2.8e-154 549.3 453 65.1
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 3.6e-154 548.9 449 65.3
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 8.1e-154 547.7 453 64.9
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 3.1e-153 545.8 384 73.4
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 4.0e-153 545.4 384 73.4
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 1.2e-152 543.9 446 63.0
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 7.6e-152 541.2 455 63.7
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 2.2e-151 539.7 463 64.4
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.9e-151 539.3 340 79.4
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 3.8e-151 538.9 475 62.1
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 2.4e-150 536.2 465 61.7
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 2.4e-150 536.2 413 68.8
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.2e-149 533.9 474 60.8
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 1.2e-149 533.9 459 63.0
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 1.6e-149 533.5 342 76.9
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 6.0e-149 531.6 455 62.2
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 4.8e-146 521.9 447 62.0
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 6.2e-146 521.5 404 66.8
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 2.0e-144 516.5 501 56.3
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 9.9e-144 514.2 461 61.8
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 4.6e-141 505.4 371 72.0
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.8e-140 503.4 340 73.5
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 3.9e-140 502.3 336 76.5
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 8.2e-138 494.6 476 57.6
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.1e-137 494.2 407 65.1
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 9.0e-137 491.1 391 65.2
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 5.8e-136 488.4 454 59.0
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.2e-135 486.5 454 58.8
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 6.3e-130 468.4 461 55.3
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 7.2e-126 454.9 404 62.4
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 3.3e-123 446.0 330 70.6
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.2e-122 443.4 392 61.5
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 6.3e-122 441.8 255 82.4
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.9e-119 433.0 392 59.7
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 5.1e-116 422.2 479 49.3
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 2.0e-115 420.2 360 62.2
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 4.1e-113 412.5 255 76.1
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.2e-110 402.9 253 76.7
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 4.7e-109 399.1 460 52.0
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.5e-107 394.0 381 56.7
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.5e-104 382.9 353 61.5
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 5.0e-103 379.0 417 52.0
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.2e-102 375.9 309 61.8
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 9.1e-97 358.2 396 48.2
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.6e-96 357.5 440 49.5
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 7.7e-96 355.1 360 51.9
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 1.6e-93 347.4 242 69.4
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.6e-93 347.4 363 50.4
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 7.5e-91 338.6 319 59.2
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 2.3e-84 317.0 406 44.6
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 4.1e-81 306.2 336 51.8
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.2e-73 280.0 454 42.1
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.7e-64 250.4 440 40.0
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 1.3e-55 221.5 234 54.7
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.6e-53 214.5 287 44.6
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 1.4e-52 211.5 163 63.8
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 1.6e-48 198.0 194 60.3
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.9e-46 191.0 299 42.1
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 4.5e-35 153.3 122 65.6
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 1.7e-34 151.4 93 75.3
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 1.8e-31 141.4 331 30.2
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.3e-31 141.0 192 47.4
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 3.0e-31 140.6 134 59.7
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 6.7e-31 139.4 137 61.3
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.9e-25 121.3 125 52.0
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 3.2e-25 120.6 60 86.7
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 2.5e-22 110.9 207 34.3
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.3e-18 98.6 73 71.2
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.2e-18 97.8 213 39.9
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 6.7e-07 59.7 102 43.1


User provided reference genes

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