Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.8e-254 882.1 453 100.0
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.1e-193 680.2 449 76.8
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 8.4e-183 644.0 463 73.2
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 4.1e-182 641.7 451 73.8
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 3.5e-181 638.6 451 72.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.3e-180 636.0 451 72.5
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.9e-179 632.9 449 72.8
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 7.3e-179 630.9 459 72.5
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 7.3e-179 630.9 452 71.9
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 3.6e-178 628.6 451 71.6
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.7e-178 628.2 450 72.2
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.1e-177 627.1 450 71.3
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 4.0e-177 625.2 449 71.9
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 5.2e-177 624.8 456 72.6
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 8.4e-175 617.5 449 71.0
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 4.2e-174 615.1 442 72.6
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 7.1e-174 614.4 474 69.6
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 9.3e-174 614.0 449 70.2
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 9.3e-174 614.0 450 69.8
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 4.6e-173 611.7 451 70.7
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.6e-173 611.7 451 70.7
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 2.3e-172 609.4 426 74.4
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 6.6e-172 607.8 492 66.5
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 1.5e-171 606.7 450 70.2
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 4.3e-171 605.1 465 69.7
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.3e-170 603.6 449 69.3
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.4e-169 599.4 488 66.0
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.3e-167 593.6 457 69.6
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 2.2e-167 592.8 452 69.0
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 3.8e-167 592.0 445 70.6
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 8.4e-167 590.9 435 69.0
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.1e-166 590.5 451 69.4
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.4e-166 590.1 453 68.0
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.9e-166 589.7 466 67.2
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.6e-165 586.6 514 62.8
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 2.7e-165 585.9 449 68.2
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.1e-163 580.5 452 67.5
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 5.6e-163 578.2 457 67.0
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.6e-162 576.6 451 67.6
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 2.1e-162 576.2 430 67.4
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.1e-162 576.2 457 67.2
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 2.4e-161 572.8 445 67.9
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 1.2e-160 570.5 437 67.0
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 2.0e-160 569.7 442 67.4
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 5.8e-160 568.2 450 66.9
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 7.6e-160 567.8 457 67.2
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 3.8e-159 565.5 442 67.0
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 3.8e-159 565.5 430 66.7
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.1e-158 563.9 435 67.8
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.9e-158 563.1 444 67.3
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.9e-158 563.1 436 66.3
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 2.4e-158 562.8 451 65.4
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.2e-158 562.4 493 62.3
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 3.2e-158 562.4 437 66.8
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 9.3e-158 560.8 455 66.4
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.6e-157 560.1 436 66.1
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.1e-155 553.9 450 65.8
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 2.5e-155 552.7 447 64.7
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 3.3e-155 552.4 434 67.3
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.3e-154 550.4 431 67.5
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 4.8e-154 548.5 429 66.7
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.1e-153 547.4 448 63.8
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 6.9e-153 544.7 473 61.1
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 2.6e-152 542.7 468 61.5
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.7e-151 540.0 436 64.7
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.9e-151 539.3 447 63.8
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.8e-151 538.9 442 63.3
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.9e-151 538.5 443 63.4
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.1e-150 537.3 444 63.7
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.6e-149 533.5 440 65.0
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 3.5e-149 532.3 453 64.5
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.3e-148 530.4 391 69.6
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 3.9e-148 528.9 458 62.0
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.5e-147 526.9 450 61.6
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 8.2e-146 521.2 521 54.9
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 1.4e-145 520.4 451 62.3
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.8e-145 520.0 424 66.0
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 2.4e-145 519.6 477 59.5
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 6.9e-145 518.1 450 59.8
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.2e-144 517.3 406 65.3
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 2.0e-144 516.5 429 62.7
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 1.0e-143 514.2 447 60.4
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.7e-143 513.5 443 63.9
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 3.8e-143 512.3 418 66.0
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 5.0e-143 511.9 447 60.2
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 8.5e-143 511.1 430 61.9
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-142 510.8 445 60.4
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 7.2e-142 508.1 445 60.7
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 7.2e-142 508.1 447 60.6
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 9.4e-142 507.7 428 61.9
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 9.4e-142 507.7 436 60.8
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 1.2e-141 507.3 440 60.9
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.6e-141 506.9 429 61.8
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 6.1e-141 505.0 452 60.2
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 6.1e-141 505.0 452 60.2
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.9e-139 500.0 450 60.0
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.7e-138 496.9 428 61.0
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 9.4e-134 481.1 342 72.8
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.2e-133 480.7 440 59.5
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 6.7e-132 474.9 470 58.1
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.8e-130 469.5 443 59.8
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 6.3e-130 468.4 454 56.8
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 3.1e-129 466.1 462 57.1
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.0e-128 463.4 443 58.5
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 2.9e-127 459.5 471 53.9
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 1.2e-115 421.0 376 59.8
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.1e-110 404.4 448 52.0
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 8.8e-108 394.8 442 50.7
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.6e-104 384.0 298 67.1
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 5.2e-100 369.0 369 59.3
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 5.2e-100 369.0 297 65.3
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.2e-99 367.9 369 57.2
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 9.8e-99 364.8 492 44.7
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 4.1e-97 359.4 520 43.5
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.9e-94 350.5 271 68.6
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 6.8e-92 342.0 476 43.5
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 5.2e-76 289.3 514 38.1
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 3.4e-75 286.6 606 33.7
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.4e-57 227.3 466 34.8
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 3.5e-56 223.4 458 33.4
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.1e-52 211.8 485 32.2
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 2.5e-46 190.7 166 60.8
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 2.8e-45 187.2 248 49.2
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.8e-44 184.5 246 45.1
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.0e-35 154.5 225 44.0
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 6.5e-26 122.9 188 45.2
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.9e-25 121.3 101 60.4
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 2.5e-25 120.9 188 45.2
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.8e-20 104.8 91 63.7
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 4.1e-20 103.6 168 41.7
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 3.2e-17 94.0 71 59.2
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.7e-16 90.1 241 30.7
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 6.1e-16 89.7 111 48.6
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 3.9e-15 87.0 74 56.8
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 3.3e-14 84.0 110 46.4
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.1e-12 79.0 112 44.6
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 5.9e-11 73.2 111 45.0
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.1e-09 68.9 63 57.1
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 5.5e-09 66.6 93 45.2
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 2.1e-08 64.7 93 44.1
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 8.0e-08 62.8 41 70.7
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 8.0e-08 62.8 59 59.3
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 2.0e-06 58.2 34 79.4
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 3.3e-06 57.4 79 49.4
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 4.4e-06 57.0 144 29.9


User provided reference genes

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