Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.1e-262 907.9 455 100.0
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.9e-163 579.7 472 66.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 9.1e-129 464.5 519 52.2
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.1e-125 453.4 465 54.0
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.7e-125 453.0 458 53.9
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.7e-125 453.0 458 55.5
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 4.0e-124 449.1 429 59.4
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 2.6e-123 446.4 479 53.7
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 9.1e-121 438.0 487 51.3
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 3.8e-119 432.6 483 50.9
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 6.5e-119 431.8 491 51.7
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.5e-118 429.9 467 52.0
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 2.5e-118 429.9 481 52.0
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.6e-117 427.2 487 51.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.6e-117 427.2 478 51.7
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-116 423.7 476 51.9
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 2.8e-114 416.4 476 51.5
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 2.8e-114 416.4 449 52.6
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 3.7e-114 416.0 459 52.1
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 6.3e-114 415.2 483 51.8
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.4e-113 413.3 440 54.3
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.1e-113 412.9 493 49.9
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 5.4e-113 412.1 447 53.0
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 7.8e-112 408.3 459 51.0
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 7.8e-112 408.3 437 52.9
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 5.0e-111 405.6 416 56.0
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.0e-111 405.6 445 51.7
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 8.6e-111 404.8 449 50.8
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 8.6e-111 404.8 437 53.3
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.9e-110 403.7 487 49.7
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.1e-109 400.2 447 51.0
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.7e-109 399.1 485 49.7
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.0e-108 397.9 447 53.5
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.4e-108 397.5 481 50.3
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 5.2e-108 395.6 489 46.4
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 6.8e-108 395.2 448 51.8
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 2.6e-107 393.3 472 51.3
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 3.4e-107 392.9 448 50.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 4.4e-107 392.5 484 51.4
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.8e-107 391.3 415 52.5
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.3e-106 391.0 450 51.6
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 3.7e-106 389.4 473 48.8
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 3.7e-106 389.4 460 47.6
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 6.4e-106 388.7 453 49.7
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.1e-105 387.9 485 49.9
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.4e-105 386.7 453 50.1
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.4e-105 386.7 453 50.1
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 6.6e-103 378.6 458 49.3
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 1.9e-102 377.1 502 45.2
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 4.3e-102 375.9 462 48.3
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.1e-97 361.3 441 47.2
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 5.4e-97 359.0 445 47.4
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 5.0e-95 352.4 448 48.9
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.2e-91 341.3 395 48.6
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.3e-87 327.8 480 45.6
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 9.5e-86 321.6 383 49.6
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 3.4e-75 286.6 439 41.2
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 7.6e-75 285.4 427 41.9
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 2.8e-69 266.9 442 38.5
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 6.2e-69 265.8 437 40.0
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.8e-67 259.2 448 38.6
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-66 258.1 437 39.8
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.2e-65 253.4 427 39.3
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.2e-65 253.4 427 39.3
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 5.4e-65 252.7 440 38.9
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 5.1e-63 246.1 476 37.2
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 2.5e-62 243.8 435 38.2
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 5.6e-62 242.7 341 45.7
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 2.8e-61 240.4 454 35.9
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 8.1e-61 238.8 454 35.7
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.1e-60 238.4 426 36.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.8e-60 237.7 446 35.7
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 9.0e-60 235.3 435 35.9
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.5e-59 234.6 324 45.4
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 2.0e-59 234.2 433 35.6
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 2.6e-59 233.8 435 35.6
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.6e-59 233.8 435 35.6
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 2.6e-59 233.8 435 35.6
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.5e-59 233.0 423 36.4
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 6.4e-58 229.2 430 35.3
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 6.4e-58 229.2 449 33.9
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.4e-57 228.0 426 37.8
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 6.7e-55 219.2 366 39.1
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.5e-54 218.0 174 61.5
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 9.6e-54 215.3 433 34.2
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.6e-53 214.5 438 38.6
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.1e-53 214.2 436 34.9
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.7e-53 213.4 436 34.9
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 6.2e-53 212.6 449 33.9
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.0e-52 209.9 211 55.0
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.9e-50 203.8 431 32.7
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.1e-49 201.8 336 38.7
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.1e-49 201.8 395 35.9
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 6.0e-48 196.1 387 35.4
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 3.0e-47 193.7 416 32.5
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.2e-45 187.6 332 36.7
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.3e-45 186.0 383 35.2
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.0e-44 182.2 309 38.5
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.2e-43 181.8 359 35.7
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.0e-43 181.0 367 35.1
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 3.4e-43 180.3 433 32.3
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 4.5e-43 179.9 430 31.4
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.0e-42 178.7 115 72.2
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 3.8e-42 176.8 352 34.7
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 5.0e-42 176.4 339 38.3
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 4.2e-41 173.3 145 56.6
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 4.6e-40 169.9 377 32.1
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.8e-39 167.9 418 32.5
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.9e-39 166.8 366 33.9
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.5e-38 164.9 359 32.0
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 2.0e-38 164.5 372 33.1
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 3.3e-38 163.7 432 28.7
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 4.3e-38 163.3 369 33.6
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.8e-37 159.8 375 32.0
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.8e-37 159.8 373 31.9
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 4.8e-37 159.8 252 43.7
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 2.4e-36 157.5 163 51.5
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 4.2e-33 146.7 269 34.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 5.5e-33 146.4 111 63.1
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.9e-31 140.2 353 31.4
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.6e-30 137.5 353 31.2
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.8e-29 133.3 378 32.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.1e-28 130.2 349 30.9
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 7.0e-28 129.4 292 34.9
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 7.0e-28 129.4 292 34.9
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.5e-27 128.3 274 32.1
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 2.9e-26 124.0 267 34.1
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.8e-26 123.6 351 30.8
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.0e-26 123.2 390 29.2
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-24 118.2 162 46.9
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 3.6e-24 117.1 162 46.9
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.4e-23 115.2 139 41.7
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 5.2e-23 113.2 152 46.7
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.1e-22 112.1 164 43.9
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.5e-22 111.7 166 43.4
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 3.7e-21 107.1 276 28.3
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.1e-20 105.5 163 39.3
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.8e-20 104.8 129 38.8
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 4.5e-19 100.1 72 66.7
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.5e-18 95.9 104 46.2
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.2e-16 92.0 119 42.9
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.4e-12 78.6 122 45.1
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.9e-09 68.2 100 35.0
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.2e-08 65.5 136 38.2
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.0e-07 62.4 95 38.9
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 4.0e-07 60.5 75 49.3
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 8.8e-07 59.3 62 48.4


User provided reference genes

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