Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 9.9e-248 859.8 464 100.0
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 3.2e-190 668.7 434 78.1
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 8.9e-180 634.0 433 72.3
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 9.8e-179 630.6 439 72.7
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.3e-178 630.2 434 72.1
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.0e-177 624.4 438 76.0
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 5.9e-176 621.3 434 71.9
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 2.9e-175 619.0 434 72.4
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 3.9e-175 618.6 437 71.2
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.1e-174 617.1 439 71.3
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.1e-174 617.1 439 71.3
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.2e-173 613.6 437 70.9
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 2.8e-173 612.5 431 70.8
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 6.2e-173 611.3 435 71.7
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.5e-171 606.7 434 70.3
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-171 606.7 445 69.7
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 9.8e-171 604.0 434 70.3
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 9.8e-171 604.0 434 70.5
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 9.8e-171 604.0 461 66.2
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.2e-170 602.8 436 69.7
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 6.4e-170 601.3 422 70.6
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 8.3e-170 600.9 433 69.7
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 1.4e-169 600.1 433 69.7
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.4e-169 600.1 434 70.3
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.7e-168 595.9 424 70.5
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 7.8e-168 594.3 462 65.8
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 5.0e-167 591.7 433 68.1
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 6.6e-167 591.3 433 68.4
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.1e-166 590.5 434 70.5
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.5e-166 590.1 439 66.7
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.9e-166 589.7 434 68.7
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 3.3e-166 589.0 433 68.8
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 4.3e-166 588.6 439 67.9
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 4.3e-166 588.6 439 66.7
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 9.5e-166 587.4 434 68.0
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.8e-165 585.9 433 66.3
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 3.6e-165 585.5 439 66.5
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 4.7e-165 585.1 432 68.5
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 8.1e-165 584.3 424 68.4
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.8e-164 583.2 466 64.8
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.8e-164 583.2 425 67.8
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.8e-164 583.2 421 66.7
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.3e-164 582.8 427 66.7
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 3.1e-164 582.4 421 66.5
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.2e-164 581.6 447 66.2
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 5.2e-164 581.6 419 69.5
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 6.8e-164 581.3 432 67.8
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.0e-163 579.7 423 69.3
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 3.4e-163 578.9 431 66.8
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 3.4e-163 578.9 432 66.9
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 7.5e-163 577.8 450 71.1
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 9.8e-163 577.4 426 67.6
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.7e-162 576.6 440 65.5
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 4.9e-162 575.1 441 66.9
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 4.9e-162 575.1 449 65.7
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 6.4e-162 574.7 432 72.2
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 8.3e-162 574.3 505 59.8
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.9e-161 573.2 436 65.8
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 3.2e-161 572.4 430 66.7
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 4.1e-161 572.0 435 66.9
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 4.1e-161 572.0 436 66.1
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 5.4e-161 571.6 412 71.1
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.1e-161 571.2 419 67.5
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 7.1e-161 571.2 409 74.6
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 9.2e-161 570.9 435 66.7
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 9.2e-161 570.9 431 66.8
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 9.2e-161 570.9 425 67.1
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.5e-160 568.9 435 65.1
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 6.0e-160 568.2 432 65.5
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 1.3e-159 567.0 436 64.0
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 1.7e-159 566.6 424 66.5
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.0e-159 565.8 431 66.6
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 3.3e-158 562.4 434 64.1
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 7.3e-158 561.2 444 63.5
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 4.7e-157 558.5 435 64.6
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.4e-156 557.0 437 64.1
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 4.0e-156 555.4 478 61.5
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.0e-155 553.1 449 64.1
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 2.6e-155 552.7 438 64.8
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.9e-154 549.3 365 71.8
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 6.4e-154 548.1 452 63.3
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 5.4e-153 545.0 394 68.0
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 4.3e-150 535.4 430 66.0
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 5.6e-150 535.0 334 80.2
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 8.9e-148 527.7 442 60.6
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.6e-144 516.9 426 63.1
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.1e-144 516.5 345 75.7
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 8.7e-143 511.1 340 74.7
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 2.5e-142 509.6 335 75.2
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 2.1e-141 506.5 410 63.4
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.4e-140 503.8 425 62.1
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.4e-140 503.1 422 62.1
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 3.8e-138 495.7 373 66.2
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 4.9e-138 495.4 434 60.4
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 4.2e-137 492.3 370 65.1
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 5.4e-137 491.9 372 63.4
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 4.6e-136 488.8 343 72.0
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.3e-133 480.7 344 68.6
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 9.3e-129 464.5 406 60.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.6e-125 453.8 422 57.8
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 3.5e-120 436.0 304 72.4
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 9.0e-116 421.4 360 60.0
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 9.0e-116 421.4 414 50.7
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.8e-111 407.1 415 51.6
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 3.9e-111 406.0 450 51.1
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 3.1e-108 396.4 324 60.8
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 1.4e-105 387.5 417 48.9
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 2.0e-102 377.1 372 59.1
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 5.7e-102 375.6 417 50.1
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 6.3e-101 372.1 365 56.7
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 3.2e-97 359.8 270 64.8
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.9e-96 355.1 437 48.7
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.7e-93 347.4 333 56.8
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 2.7e-88 330.1 575 35.3
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 6.1e-88 328.9 286 59.1
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 7.5e-86 322.0 271 60.5
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 9.7e-86 321.6 283 59.7
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 2.9e-82 310.1 209 71.3
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.7e-80 302.8 253 62.1
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 6.8e-71 272.3 215 61.9
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 9.8e-70 268.5 235 57.9
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.4e-68 263.8 160 79.4
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.1e-68 263.5 363 43.3
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 9.2e-68 261.9 234 59.4
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 3.5e-67 260.0 154 77.9
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 4.5e-67 259.6 353 45.0
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.3e-66 257.3 434 37.1
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 6.6e-66 255.8 418 39.0
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 8.6e-66 255.4 151 80.1
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 5.6e-65 252.7 422 38.4
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 1.5e-62 244.6 148 78.4
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 9.2e-60 235.3 396 38.4
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 3.9e-58 229.9 181 64.6
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.1e-55 220.3 147 70.7
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 4.0e-55 219.9 263 51.7
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 8.3e-53 212.2 348 39.1
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 1.7e-50 204.5 273 43.2
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 3.6e-48 196.8 119 80.7
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 6.0e-43 179.5 374 32.9
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.6e-35 154.8 147 56.5
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 5.1e-34 149.8 135 56.3
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 1.2e-32 145.2 90 78.9
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.1e-32 144.4 98 72.4
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.8e-32 144.1 97 74.2
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 5.4e-28 129.8 89 74.2
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 6.0e-27 126.3 80 70.0
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.2e-22 112.1 62 85.5
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 7.1e-20 102.8 395 26.6
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.5e-17 95.1 109 53.2
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.8e-15 88.2 59 69.5
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 2.6e-14 84.3 118 43.2
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 7.9e-11 72.8 50 72.0
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.3e-10 72.0 48 62.5
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-09 68.9 59 59.3


User provided reference genes

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