Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 3.0e-268 927.9 470 100.0
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 9.0e-188 660.6 422 75.1
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.4e-185 652.5 469 70.1
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.2e-185 651.7 469 69.9
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 5.4e-185 651.4 469 69.7
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 2.7e-184 649.0 457 70.5
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.5e-182 643.3 446 71.7
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.9e-182 642.9 483 67.1
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 2.4e-180 636.0 456 71.1
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.5e-179 633.3 465 69.0
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 2.0e-179 632.9 453 66.9
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.8e-178 628.6 469 67.2
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.4e-177 626.7 467 67.7
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.4e-177 626.7 449 68.2
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.4e-177 626.7 448 70.5
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.4e-177 626.7 454 69.6
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 3.2e-177 625.5 450 68.4
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 9.3e-177 624.0 397 76.6
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 2.7e-176 622.5 426 70.2
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 6.0e-176 621.3 396 74.7
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.8e-175 619.8 463 68.0
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 3.3e-174 615.5 441 66.4
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 2.0e-171 606.3 462 66.9
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.0e-171 606.3 405 71.6
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 7.6e-171 604.4 398 71.9
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.2e-170 602.8 472 65.9
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 2.9e-170 602.4 449 66.4
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 6.4e-170 601.3 463 65.0
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.9e-169 599.7 396 72.0
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.9e-169 599.7 396 72.0
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.9e-169 599.7 471 64.5
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 4.2e-169 598.6 468 64.7
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.2e-168 597.0 397 70.5
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.2e-168 597.0 462 64.1
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 1.6e-168 596.7 459 63.8
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 1.6e-168 596.7 481 62.6
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.7e-168 595.9 396 71.7
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 2.7e-168 595.9 462 64.1
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 4.6e-168 595.1 365 75.6
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 4.6e-168 595.1 477 63.7
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 3.9e-167 592.0 462 63.6
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 1.1e-166 590.5 459 63.2
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 2.5e-166 589.3 459 63.2
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 4.3e-166 588.6 464 62.3
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 2.1e-165 586.3 402 67.9
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 1.1e-164 583.9 482 61.2
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 1.1e-164 583.9 396 68.9
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 1.1e-164 583.9 396 68.9
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 1.4e-164 583.6 467 64.7
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 3.1e-164 582.4 396 68.7
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 3.1e-164 582.4 369 74.5
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 4.0e-164 582.0 403 67.2
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 4.0e-164 582.0 481 62.4
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.0e-164 582.0 467 64.5
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 5.3e-164 581.6 510 60.8
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 5.3e-164 581.6 469 61.2
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 9.0e-164 580.9 404 69.1
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 1.5e-163 580.1 402 67.7
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.5e-163 580.1 486 60.7
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 2.0e-163 579.7 467 61.7
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 2.6e-163 579.3 465 63.7
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 3.4e-163 578.9 454 62.6
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 4.5e-163 578.6 448 64.5
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.3e-162 577.0 483 62.5
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 2.2e-162 576.2 424 64.9
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 2.9e-162 575.9 424 64.9
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 4.9e-162 575.1 364 73.4
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 6.5e-162 574.7 364 73.1
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 8.4e-162 574.3 407 68.3
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 1.1e-161 573.9 407 68.3
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 3.2e-161 572.4 456 62.9
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 4.2e-161 572.0 393 69.7
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 4.2e-161 572.0 448 63.6
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 5.5e-161 571.6 450 62.4
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 5.5e-161 571.6 422 68.5
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 7.1e-161 571.2 466 62.9
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 2.7e-160 569.3 442 65.8
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 3.5e-160 568.9 459 61.9
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 6.0e-160 568.2 462 62.8
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 6.0e-160 568.2 547 55.4
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 6.0e-160 568.2 383 70.2
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 1.0e-159 567.4 424 63.9
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 1.0e-159 567.4 424 63.9
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 1.8e-159 566.6 364 72.0
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.7e-159 564.3 456 62.1
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 1.1e-158 563.9 477 59.1
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.5e-158 562.8 331 78.2
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 6.3e-157 558.1 453 62.0
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 8.2e-157 557.8 461 61.4
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 2.4e-156 556.2 412 65.3
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 9.0e-156 554.3 473 59.4
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 9.0e-156 554.3 356 73.6
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 2.0e-155 553.1 459 60.6
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 2.5e-153 546.2 372 67.7
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.2e-152 543.9 355 69.6
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 2.1e-152 543.1 360 69.4
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 4.6e-152 542.0 457 61.9
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 6.1e-152 541.6 467 61.2
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.8e-151 540.0 426 62.2
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 4.3e-150 535.4 387 67.2
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 2.2e-149 533.1 402 63.9
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.1e-148 530.8 409 64.1
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.1e-148 530.8 494 57.9
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.4e-148 530.4 331 74.3
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 4.1e-148 528.9 418 62.2
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 2.0e-147 526.6 594 50.2
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 3.8e-146 522.3 351 70.4
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 7.2e-145 518.1 352 69.9
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 1.5e-142 510.4 371 66.8
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.0e-142 510.0 393 63.1
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.0e-142 510.0 393 63.1
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.8e-140 503.4 429 61.1
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.3e-138 497.3 415 61.0
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.8e-138 495.7 354 67.8
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.0e-138 495.4 354 67.8
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 1.8e-135 486.9 435 57.0
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 2.3e-135 486.5 467 57.6
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 1.8e-132 476.9 417 58.3
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.7e-130 470.3 392 55.9
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.5e-130 468.0 291 72.2
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 2.1e-128 463.4 297 72.4
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 4.7e-128 462.2 421 54.9
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 4.8e-125 452.2 367 54.2
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 7.0e-124 448.4 361 60.9
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 1.6e-123 447.2 353 58.6
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.5e-121 439.9 331 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 9.8e-118 427.9 368 56.5
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 2.7e-115 419.9 393 54.2
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 8.3e-109 398.3 253 75.9
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 2.7e-107 393.3 217 81.1
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 2.7e-107 393.3 246 72.8
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.0e-106 391.3 249 71.5
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 6.6e-106 388.7 397 49.4
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.0e-99 367.1 206 84.0
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 8.9e-79 298.5 368 41.3
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.4e-71 273.9 284 51.8
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 2.6e-62 243.8 283 42.4
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 4.2e-60 236.5 349 38.7
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 4.6e-51 206.5 176 58.5
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 2.9e-45 187.2 152 63.2
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.3e-37 161.8 93 78.5
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 9.4e-36 155.6 85 80.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 1.3e-24 118.6 77 70.1
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 1.1e-20 105.5 110 49.1
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 1.5e-20 105.1 95 56.8
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 1.8e-18 98.2 93 49.5
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 6.7e-18 96.3 62 69.4
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.3e-17 94.0 55 76.4
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.3e-17 94.0 55 76.4
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.3e-17 94.0 55 76.4
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 9.7e-17 92.4 55 74.5
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 3.7e-16 90.5 54 74.1
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 8.2e-16 89.4 77 62.3
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.8e-15 88.2 54 72.2
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 7.5e-09 66.2 32 87.5
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 1.1e-07 62.4 53 58.5
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.1e-07 60.8 35 74.3
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.1e-07 60.8 35 74.3


User provided reference genes

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