Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 5.4e-281 970.3 479 100.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.0e-231 806.6 471 84.1
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 3.0e-231 805.1 477 83.0
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.0e-227 792.3 472 81.4
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 2.2e-226 788.9 475 80.6
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 3.9e-223 778.1 478 78.9
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.9e-222 775.8 475 78.9
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.5e-222 775.4 479 78.7
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 2.5e-222 775.4 477 79.0
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.3e-221 773.1 479 79.1
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.3e-221 773.1 475 78.1
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.2e-221 772.3 478 79.5
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 3.7e-221 771.5 478 78.0
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 3.7e-221 771.5 478 78.7
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 4.8e-221 771.2 480 78.8
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 4.8e-221 771.2 478 77.8
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 8.2e-221 770.4 478 78.7
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 8.2e-221 770.4 475 78.7
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.1e-220 770.0 478 78.9
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 6.9e-220 767.3 473 78.0
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.9e-220 767.3 478 78.0
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.0e-220 766.9 470 78.1
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.6e-219 765.4 472 78.4
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.5e-219 764.6 470 78.1
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 5.9e-219 764.2 473 77.8
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 7.7e-219 763.8 478 78.7
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.0e-218 763.5 474 78.1
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.7e-218 762.7 474 77.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 2.9e-218 761.9 478 77.2
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.0e-218 761.1 470 77.2
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 5.0e-218 761.1 476 77.3
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 8.5e-218 760.4 472 77.8
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.2e-217 758.4 478 77.6
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 4.2e-217 758.1 481 76.7
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.6e-216 756.1 478 76.4
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.9e-215 751.5 476 76.3
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 3.3e-214 748.4 482 76.3
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 5.7e-214 747.7 482 76.3
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 2.8e-213 745.3 459 79.5
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.1e-212 743.4 480 76.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 5.3e-212 741.1 475 76.2
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 3.4e-211 738.4 478 73.8
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 6.5e-210 734.2 479 72.4
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.5e-209 732.3 474 74.9
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.6e-208 728.4 476 75.6
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.7e-208 728.0 465 77.6
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 3.0e-207 725.3 431 81.4
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 3.9e-207 724.9 476 75.4
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 8.8e-207 723.8 478 74.3
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.0e-206 722.6 457 77.2
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.6e-206 722.2 480 74.8
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.3e-205 719.9 480 75.8
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.2e-205 719.2 478 74.3
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.8e-205 718.8 452 76.5
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.7e-205 718.4 478 74.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.8e-205 718.0 444 77.7
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 8.2e-205 717.2 476 73.1
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 3.1e-204 715.3 481 73.4
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.1e-204 714.9 478 73.0
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.5e-203 711.4 475 73.9
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 4.5e-203 711.4 482 73.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 2.9e-202 708.8 474 72.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 2.9e-202 708.8 472 72.9
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.8e-202 708.4 472 73.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 8.5e-202 707.2 434 79.7
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.5e-201 706.4 472 73.3
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.9e-201 706.1 472 73.3
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 5.5e-201 704.5 474 71.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 6.7e-199 697.6 546 64.8
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 2.6e-198 695.7 470 72.8
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.6e-198 695.7 475 72.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 4.4e-198 694.9 474 72.8
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.2e-197 692.6 479 71.8
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 8.2e-197 690.6 475 73.5
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 5.3e-196 688.0 482 72.0
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.0e-196 687.6 478 71.8
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 9.1e-196 687.2 475 71.6
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.2e-195 686.8 479 72.0
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 3.5e-195 685.3 474 72.2
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 4.5e-195 684.9 479 71.4
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.7e-194 682.9 479 71.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-194 682.9 472 72.0
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.2e-194 682.6 474 72.4
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.9e-194 682.2 478 71.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 2.9e-194 682.2 479 71.4
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-193 680.2 473 72.5
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.1e-193 680.2 473 72.5
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 9.4e-193 677.2 473 72.3
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.7e-192 675.6 474 71.5
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 3.6e-192 675.2 473 72.3
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 2.8e-189 665.6 468 69.2
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 5.0e-186 654.8 432 73.8
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 5.0e-186 654.8 474 69.2
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.1e-185 653.7 503 65.6
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 7.2e-185 651.0 483 68.3
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.1e-184 647.9 475 69.5
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.8e-183 646.4 522 62.5
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 6.8e-183 644.4 421 74.3
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 6.8e-183 644.4 479 67.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.4e-182 642.1 418 75.1
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 3.7e-181 638.6 445 71.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 7.7e-179 630.9 531 63.5
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 6.6e-178 627.9 480 65.0
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 8.6e-178 627.5 472 65.9
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 7.2e-177 624.4 471 66.2
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 7.0e-172 607.8 372 78.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.3e-169 598.6 474 64.6
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 8.3e-165 584.3 484 62.2
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 4.1e-164 582.0 413 70.2
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.2e-163 580.5 477 65.2
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-160 570.5 355 77.2
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.7e-160 568.5 471 63.1
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-157 560.5 365 75.1
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 8.3e-157 557.8 519 57.2
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 3.3e-153 545.8 497 58.1
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.4e-148 530.4 474 59.1
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.7e-147 526.2 476 58.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.9e-133 479.6 476 52.9
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.4e-127 459.9 475 53.3
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 6.9e-127 458.4 552 45.8
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.3e-114 416.8 275 72.4
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.1e-113 414.5 321 67.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 4.1e-111 406.0 311 67.5
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.4e-109 398.3 234 82.1
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 3.4e-94 349.7 483 43.9
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.0e-93 348.2 284 65.5
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.7e-88 330.9 386 46.9
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 8.5e-85 318.5 203 74.9
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.4e-79 300.4 274 56.9
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.9e-76 290.8 486 36.4
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.7e-73 279.3 248 59.7
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 5.5e-68 262.7 507 35.7
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.1e-67 260.8 271 50.2
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.2e-62 245.0 463 37.4
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.8e-58 231.1 460 36.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.9e-56 223.8 174 66.1
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.1e-55 219.9 183 60.7
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.9e-53 213.4 283 45.6
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.3e-52 210.3 201 54.2
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.6e-51 208.0 195 53.8
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.0e-46 189.5 116 81.0
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.7e-45 188.0 116 79.3
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.7e-45 188.0 202 51.5
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.6e-45 186.0 116 79.3
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.1e-39 168.7 107 72.9
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.4e-39 168.3 120 67.5
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.9e-39 167.9 107 74.8
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.9e-37 160.2 312 34.6
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.5e-36 155.6 116 69.8
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 2.3e-34 151.0 119 61.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 2.2e-32 144.4 92 70.7
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.3e-29 134.4 67 95.5
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.4e-26 125.2 121 57.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.1e-23 115.5 125 54.4
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.2e-22 112.1 65 80.0
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.2e-17 95.5 58 79.3
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 6.0e-14 83.2 62 64.5
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 4.9e-08 63.5 88 43.2
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 1.4e-07 62.0 41 73.2
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 7.1e-07 59.7 39 74.4
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.6e-06 58.5 39 71.8
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 3.5e-06 57.4 46 56.5


User provided reference genes

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