Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 7.2e-281 969.9 487 100.0
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 1.2e-232 809.7 479 83.5
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 1.7e-221 772.7 483 78.3
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 4.9e-221 771.2 479 78.7
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 7.0e-220 767.3 479 79.3
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 1.6e-219 766.1 480 79.2
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 1.3e-218 763.1 482 78.2
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 3.0e-218 761.9 479 77.2
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 6.6e-218 760.8 479 77.5
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 6.6e-218 760.8 479 78.1
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 2.5e-217 758.8 479 78.3
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 1.6e-216 756.1 481 75.9
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 2.1e-216 755.7 489 76.7
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 2.8e-216 755.4 479 77.5
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 1.8e-215 752.7 479 75.8
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 5.8e-214 747.7 479 76.4
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 5.8e-214 747.7 488 77.5
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 9.8e-214 746.9 479 75.8
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 1.3e-213 746.5 479 74.9
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 1.3e-213 746.5 479 76.2
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 2.9e-213 745.3 479 76.8
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 4.9e-213 744.6 479 75.6
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 8.3e-213 743.8 479 74.9
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 1.1e-212 743.4 479 74.7
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 1.1e-212 743.4 485 76.7
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 1.1e-212 743.4 479 74.9
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 3.2e-212 741.9 479 75.8
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 1.7e-210 736.1 479 74.3
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.7e-210 736.1 479 75.8
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 3.9e-210 734.9 479 74.7
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 5.1e-210 734.6 479 75.8
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 6.6e-210 734.2 479 74.5
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.1e-209 733.4 479 74.5
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.5e-209 733.0 479 74.5
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 4.3e-209 731.5 481 73.8
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 1.2e-208 729.9 479 73.3
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 3.6e-208 728.4 591 64.1
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 8.9e-207 723.8 483 71.6
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 9.9e-206 720.3 524 70.0
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 5.4e-204 714.5 479 73.9
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 3.0e-202 708.8 479 72.7
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 2.4e-199 699.1 479 70.8
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 2.4e-199 699.1 469 71.2
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 2.6e-198 695.7 482 71.0
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 2.6e-198 695.7 482 71.0
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 3.4e-198 695.3 479 71.4
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 6.4e-197 691.0 479 71.2
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 6.4e-197 691.0 479 69.9
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 9.3e-196 687.2 479 68.9
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 3.5e-195 685.3 479 71.0
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 1.7e-194 682.9 479 70.6
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 8.7e-194 680.6 486 72.0
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.1e-193 680.2 480 69.2
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 2.5e-193 679.1 479 68.7
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 2.1e-192 676.0 483 69.8
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 4.0e-191 671.8 482 69.9
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 9.0e-191 670.6 477 67.5
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.5e-190 669.8 482 69.3
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 2.6e-190 669.1 479 66.8
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 2.6e-190 669.1 488 69.5
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 4.5e-190 668.3 477 67.1
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 1.7e-189 666.4 477 66.9
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 1.9e-188 662.9 477 66.7
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 1.9e-188 662.9 477 66.7
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 1.9e-188 662.9 477 66.7
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 2.4e-188 662.5 477 66.7
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 2.4e-188 662.5 478 67.2
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 2.4e-188 662.5 478 67.2
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 7.1e-188 661.0 479 69.5
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.2e-187 660.2 477 66.5
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 6.6e-186 654.4 474 66.2
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 8.7e-186 654.1 477 65.6
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 1.5e-185 653.3 479 67.0
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 1.6e-184 649.8 483 68.7
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 2.8e-184 649.0 489 65.6
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 2.2e-181 639.4 479 65.8
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 2.4e-180 636.0 479 67.4
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 4.3e-169 598.6 430 67.9
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 1.3e-162 577.0 408 69.6
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.1e-153 547.4 506 58.1
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 4.8e-152 542.0 428 65.2
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 5.3e-151 538.5 479 57.0
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 3.4e-150 535.8 481 56.8
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.9e-148 530.0 392 66.8
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 3.9e-146 522.3 483 54.9
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.5e-145 520.4 483 54.5
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.7e-139 499.6 376 66.5
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 6.1e-131 471.9 380 64.5
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 7.5e-129 464.9 317 70.7
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 3.6e-123 446.0 498 48.4
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 3.0e-122 443.0 483 48.0
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 7.5e-121 438.3 488 48.4
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 2.0e-118 430.3 488 47.1
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 1.7e-117 427.2 491 48.1
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 2.8e-115 419.9 297 67.0
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.4e-114 417.5 355 59.4
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.4e-112 408.7 339 61.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 7.5e-105 385.2 428 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.9e-100 370.5 484 43.2
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 8.1e-99 365.2 237 75.1
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 1.7e-88 330.9 226 70.8
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 2.1e-83 313.9 475 37.5
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 1.4e-79 301.2 193 76.7
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 5.6e-76 289.3 213 65.3
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 6.5e-48 196.1 161 59.6
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 6.3e-43 179.5 137 62.0
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 6.9e-34 149.4 91 76.9
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 2.5e-23 114.4 71 80.3
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 5.5e-23 113.2 81 60.5
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 1.3e-19 102.1 69 71.0
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 1.8e-18 98.2 51 86.3
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 7.0e-18 96.3 49 87.8
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 3.5e-17 94.0 517 23.8
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 7.2e-15 86.3 51 74.5
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 2.1e-14 84.7 46 78.3
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 2.3e-08 64.7 512 21.7
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 2.3e-08 64.7 52 53.8
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 7.2e-07 59.7 45 64.4


User provided reference genes

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