Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.6e-288 995.3 499 100.0
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 3.6e-195 685.3 498 71.5
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 4.9e-184 648.3 522 64.0
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 1.9e-180 636.3 516 63.8
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.9e-180 636.3 518 65.3
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 4.3e-180 635.2 503 64.8
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.8e-178 629.8 523 62.5
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.5e-177 626.7 501 64.5
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 4.4e-177 625.2 520 64.2
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.7e-176 623.2 452 68.4
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.9e-175 619.8 490 64.1
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 5.4e-175 618.2 513 62.4
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 9.2e-175 617.5 480 66.7
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 3.0e-173 612.5 502 62.7
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 6.6e-173 611.3 509 61.7
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 8.6e-173 610.9 483 65.2
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 4.3e-172 608.6 455 66.2
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 5.6e-172 608.2 490 64.9
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 7.3e-172 607.8 455 66.4
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.1e-171 606.3 447 67.8
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 3.6e-171 605.5 447 67.8
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.8e-169 598.2 510 61.6
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 3.8e-168 595.5 403 72.7
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 6.4e-168 594.7 456 68.0
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 3.2e-167 592.4 498 64.5
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.1e-167 591.3 510 61.0
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 2.7e-166 589.3 489 62.6
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 6.0e-166 588.2 487 64.3
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.8e-166 587.8 510 60.6
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.0e-165 587.4 488 62.1
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.7e-165 586.6 489 62.2
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 7.3e-164 581.3 455 63.5
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 9.6e-164 580.9 501 61.3
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 1.3e-163 580.5 469 63.1
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 2.1e-163 579.7 461 64.2
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 3.6e-163 578.9 492 61.2
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 3.6e-163 578.9 478 62.1
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 1.1e-162 577.4 493 61.5
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 4.0e-162 575.5 480 63.1
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 5.8e-161 571.6 488 60.7
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 9.9e-161 570.9 497 61.6
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 4.9e-160 568.5 465 62.4
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 1.1e-159 567.4 454 63.7
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 1.1e-159 567.4 486 60.9
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.2e-158 563.9 461 62.9
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 6.0e-158 561.6 444 65.1
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.7e-157 560.1 465 61.7
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 3.9e-157 558.9 465 61.9
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.6e-157 558.1 485 61.0
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.7e-157 557.8 503 58.8
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.1e-156 557.4 510 58.8
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.1e-156 557.4 459 60.8
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 2.5e-156 556.2 466 61.2
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 3.6e-155 552.4 463 60.7
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 4.8e-155 552.0 495 57.8
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 6.2e-155 551.6 451 63.4
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 8.1e-155 551.2 466 60.5
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.1e-154 550.8 451 63.0
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 1.1e-154 550.8 465 60.9
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.1e-154 549.3 414 65.7
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.0e-154 548.9 414 65.7
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 5.3e-154 548.5 484 59.9
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 4.5e-153 545.4 490 60.0
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 3.8e-152 542.3 454 61.5
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 6.4e-152 541.6 463 62.0
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 1.1e-151 540.8 409 65.5
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 1.9e-151 540.0 471 59.4
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 7.1e-151 538.1 446 62.1
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 9.3e-151 537.7 493 58.2
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 1.2e-150 537.3 444 61.9
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 1.6e-150 537.0 446 61.9
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 2.1e-150 536.6 463 60.3
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.0e-149 534.3 494 57.3
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 2.3e-149 533.1 443 61.4
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 8.7e-149 531.2 484 57.9
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 2.5e-148 529.6 491 58.2
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 5.6e-148 528.5 443 61.4
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 9.6e-148 527.7 443 61.4
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 1.3e-147 527.3 442 61.3
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 1.1e-146 524.2 491 56.2
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 1.4e-146 523.9 464 57.1
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 2.4e-146 523.1 471 58.6
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 6.9e-146 521.5 485 58.1
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 1.2e-145 520.8 446 61.4
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 2.6e-145 519.6 475 58.5
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 3.4e-145 519.2 462 57.8
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 3.4e-145 519.2 352 72.4
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 6.5e-144 515.0 442 60.0
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 6.7e-141 505.0 459 56.4
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 9.0e-138 494.6 451 59.6
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 3.9e-133 479.2 460 57.8
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.0e-128 464.5 430 59.3
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 2.5e-127 459.9 335 67.8
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.1e-124 451.1 503 48.9
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 7.7e-121 438.3 397 56.4
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 5.1e-117 425.6 423 57.0
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 4.8e-115 419.1 464 51.7
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 4.1e-114 416.0 464 51.1
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 1.1e-111 407.9 417 53.0
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.3e-107 394.4 335 61.2
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 8.0e-102 375.2 404 48.5
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 6.8e-101 372.1 401 50.1
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 8.3e-99 365.2 334 60.2
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.4e-85 321.2 217 70.5
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.2e-70 271.6 405 39.0
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.1e-70 270.8 192 68.8
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 4.4e-68 263.1 335 47.8
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 4.1e-58 229.9 224 56.2
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 3.4e-44 183.7 208 49.0
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 4.9e-35 153.3 311 32.5
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.0e-32 144.1 189 49.7
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 2.9e-27 127.5 137 50.4
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 4.9e-27 126.7 106 54.7
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 3.8e-19 100.5 222 31.5
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 9.3e-18 95.9 89 55.1
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.8e-13 81.6 137 40.1
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 5.5e-10 70.1 98 44.9
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 2.1e-09 68.2 322 21.4
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.0e-08 65.9 138 27.5
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 1.7e-06 58.5 103 29.1
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 2.2e-06 58.2 189 27.0


User provided reference genes

Program Settings