Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000704m.g Citrus clementina HOM05D007729 ORTHO05D009724 0.0e+00 1140.9 577 100.0
Atru.chr2.143 Acer truncatum HOM05D007729 ORTHO05D009724 3.4e-221 771.9 586 69.1
Cpa.g.sc48.137 Carica papaya HOM05D007729 ORTHO05D009724 3.7e-183 645.6 541 62.7
Duzib177G0448 Durio zibethinus HOM05D007729 ORTHO05D009724 3.1e-182 642.5 586 58.9
GSVIVG01031211001 Vitis vinifera HOM05D007729 ORTHO05D009724 7.6e-181 637.9 554 58.5
Thecc.05G320400 Theobroma cacao HOM05D007729 ORTHO05D009724 9.3e-179 630.9 555 59.8
TAR365G0479 Trochodendron aralioides HOM05D007729 ORTHO05D009724 3.5e-178 629.0 555 59.1
RcHm_v2.0_Chr3g0456781 Rosa chinensis HOM05D007729 ORTHO05D009724 7.9e-178 627.9 553 60.4
Dinv24421 Davidia involucrata HOM05D007729 ORTHO05D009724 3.0e-177 625.9 549 57.4
Gohir.D13G114300 Gossypium hirsutum HOM05D007729 ORTHO05D009724 4.8e-175 618.6 543 60.6
Gorai.013G128200 Gossypium raimondii HOM05D007729 ORTHO05D009724 6.9e-174 614.8 543 60.4
Gohir.A13G111500 Gossypium hirsutum HOM05D007729 ORTHO05D009724 2.6e-173 612.8 543 60.0
COL.COLO4_04132 Corchorus olitorius HOM05D007729 ORTHO05D009724 3.4e-173 612.5 545 58.3
Manes.09G175100 Manihot esculenta HOM05D007729 ORTHO05D009724 5.9e-173 611.7 551 59.7
QL03p018088 Quercus lobata HOM05D007729 ORTHO05D009724 7.6e-173 611.3 567 57.8
Potri.005G020100 Populus trichocarpa HOM05D007729 ORTHO05D009724 1.7e-172 610.1 542 60.7
Actinidia16844 Actinidia chinensis HOM05D007729 ORTHO05D009724 8.5e-172 607.8 569 56.8
FAN05G4184 Fragaria x ananassa HOM05D007729 ORTHO05D009724 3.9e-169 599.0 567 57.3
Sabra05G0026100 Salix brachista HOM05D005361 ORTHO05D006518 6.3e-167 591.7 545 58.3
FAN14G4369 Fragaria x ananassa HOM05D007729 ORTHO05D009724 8.2e-167 591.3 575 56.3
THA.LOC104805912 Tarenaya hassleriana HOM05D007729 ORTHO05D009724 3.4e-165 585.9 551 57.4
Nn4g25665 Nelumbo nucifera HOM05D007729 ORTHO05D009724 3.8e-164 582.4 547 55.0
FvH4_6g07160 Fragaria vesca HOM05D007729 ORTHO05D009724 6.5e-164 581.6 519 59.5
Hma1.2p1_1320F.1_g275420 Hydrangea macrophylla HOM05D007729 ORTHO05D009724 1.1e-163 580.9 501 57.9
FAN09G4655 Fragaria x ananassa HOM05D007729 ORTHO05D009724 1.4e-163 580.5 579 55.4
CANSAT54G0579 Cannabis sativa HOM05D007729 ORTHO05D009724 1.6e-162 577.0 555 55.5
Carub.0001s0852 Capsella rubella HOM05D007729 ORTHO05D009724 4.7e-162 575.5 559 56.9
Sp1g07780 Schrenkiella parvula HOM05D007729 ORTHO05D009724 1.0e-161 574.3 558 55.9
HanXRQChr09g0268291 Helianthus annuus HOM05D007729 ORTHO05D009724 1.5e-160 570.5 548 54.9
Lj9A208G24 Lonicera japonica HOM05D007729 ORTHO05D009724 1.5e-160 570.5 537 55.3
AL1G19670 Arabidopsis lyrata HOM05D007729 ORTHO05D009724 3.7e-159 565.8 560 55.9
C08p12530 Brassica napus HOM05D007729 ORTHO05D009724 4.1e-158 562.4 559 55.3
Aa31LG1G6090 Aethionema arabicum HOM05D007729 ORTHO05D009724 5.3e-158 562.0 536 56.3
CSS0040240 Camellia sinensis var. sinensis HOM05D007729 ORTHO05D009724 7.0e-158 561.6 587 52.3
MBI18_g24956_MAGBIO Magnolia biondii HOM05D007729 ORTHO05D009724 1.2e-157 560.8 555 54.2
BraA08t35386Z Brassica rapa HOM05D007729 ORTHO05D009724 3.4e-157 559.3 571 53.8
A08p34750 Brassica napus HOM05D007729 ORTHO05D009724 1.3e-156 557.4 545 55.6
Thhalv10007209m.g Eutrema salsugineum HOM05D007729 ORTHO05D009724 1.4e-155 553.9 585 52.6
PSO761G0658 Papaver somniferum HOM05D007729 ORTHO05D009724 4.2e-155 552.4 553 54.2
TWI56G1038 Tripterygium wilfordii HOM05D007729 ORTHO05D009724 4.2e-155 552.4 548 54.4
BolC8t48891H Brassica oleracea HOM05D007729 ORTHO05D009724 5.5e-155 552.0 577 53.2
PSO210G3025 Papaver somniferum HOM05D007729 ORTHO05D009724 5.5e-155 552.0 549 54.1
Nitab4.5_0000368g0330 Nicotiana tabacum HOM05D007729 ORTHO05D009724 2.3e-153 546.6 565 52.0
PGR031G2787 Punica granatum HOM05D007729 ORTHO05D009724 3.0e-153 546.2 549 53.6
Lsat_1_v5_gn_7_73440 Lactuca sativa HOM05D007729 ORTHO05D009724 5.2e-153 545.4 544 52.0
PGSC0003DMG400024735 Solanum tuberosum HOM05D007729 ORTHO05D009724 3.3e-152 542.7 551 51.7
ECA236G3528 Erigeron canadensis HOM05D007729 ORTHO05D009724 3.1e-150 536.2 557 53.0
Solyc01g100260.4 Solanum lycopersicum HOM05D007729 ORTHO05D009724 4.1e-150 535.8 551 51.2
Peaxi162Scf00673g00025 Petunia axillaris HOM05D007729 ORTHO05D009724 5.3e-150 535.4 551 51.7
Sopen01g043770 Solanum pennellii HOM05D007729 ORTHO05D009724 7.0e-150 535.0 551 51.0
AT1G09195 Arabidopsis thaliana HOM05D007729 ORTHO05D009724 9.1e-150 534.6 514 58.0
Nitab4.5_0006072g0050 Nicotiana tabacum HOM05D007729 ORTHO05D009724 2.6e-149 533.1 587 49.6
MSTRG.20396 Avicennia marina HOM05D007729 ORTHO05D009724 1.3e-148 530.8 552 51.6
Lalb_Chr02g0147931 Lupinus albus HOM05D007729 ORTHO05D009724 2.7e-146 523.1 548 54.2
CAN.G1273.5 Capsicum annuum HOM05D007729 ORTHO05D009724 8.8e-145 518.1 556 50.0
DCAR_021068 Daucus carota HOM05D007729 ORTHO05D009724 7.5e-144 515.0 550 52.5
DCAR_021070 Daucus carota HOM05D007729 ORTHO05D009724 7.5e-144 515.0 550 52.5
Migut.B00991 Erythranthe guttata HOM05D007729 ORTHO05D009724 1.3e-143 514.2 552 50.4
EL10Ac4g09861 Beta vulgaris HOM05D007729 ORTHO05D009724 2.8e-143 513.1 541 52.1
Oeu053698.1 Olea europaea HOM05D007729 ORTHO05D009724 8.2e-143 511.5 507 53.3
SalBow7G3736 Salvia bowleyana HOM05D007729 ORTHO05D009724 5.9e-141 505.4 558 48.4
Haze_04087 Corylus avellana HOM05D007729 ORTHO05D009724 2.5e-139 500.0 492 56.7
Cc02_g34750 Coffea canephora HOM05D007729 ORTHO05D009724 5.2e-137 492.3 545 49.7
CDE12G0453 Ceratophyllum demersum HOM05D007729 ORTHO05D009724 6.8e-137 491.9 529 48.0
vmacro01545 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 2.6e-136 490.0 500 54.6
BcaC07g38483 Brassica carinata HOM05D007729 ORTHO05D009724 5.7e-136 488.8 554 51.4
AUR62000694 Chenopodium quinoa HOM05D007729 ORTHO05D009724 2.7e-133 479.9 542 49.4
Prupe.6G315600 Prunus persica HOM05D007729 ORTHO05D009724 3.8e-132 476.1 382 63.6
AUR62005264 Chenopodium quinoa HOM05D007729 ORTHO05D009724 1.8e-126 457.2 555 47.9
SGA_v2.0_scaffold53G19323 Striga asiatica HOM05D007729 ORTHO05D009724 2.0e-120 437.2 452 49.1
Atru.chr2.136 Acer truncatum HOM05D007729 ORTHO05D009724 9.2e-118 428.3 298 74.5
ATR0706G084 Amborella trichopoda HOM05D007729 ORTHO05D009724 1.2e-112 411.4 549 41.7
CARHR009150 Cardamine hirsuta HOM05D007729 ORTHO05D009724 4.6e-109 399.4 374 59.6
SEGI_22290 Sequoiadendron giganteum HOM05D007729 ORTHO05D009724 2.3e-108 397.1 555 40.0
Aqoxy2G02816 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 2.1e-106 390.6 372 54.3
Hund21744 Selenicereus undatus HOM05D007729 ORTHO05D009724 2.9e-103 380.2 541 45.3
vmacro05864 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 4.9e-103 379.4 377 56.0
Sc16g0008910 Simmondsia chinensis HOM05D007729 ORTHO05D009724 2.7e-101 373.6 384 53.1
Pp3c5_5230 Physcomitrium patens HOM05D007729 ORTHO05D009724 3.9e-100 369.8 553 38.0
Duzib147G0321 Durio zibethinus HOM05D007729 ORTHO05D009724 8.6e-100 368.6 362 58.3
Pp3c6_24770 Physcomitrium patens HOM05D007729 ORTHO05D009724 8.9e-97 358.6 552 38.4
Pp3c27_4900 Physcomitrium patens HOM05D007729 ORTHO05D009724 2.1e-85 320.9 570 34.6
vmacro20072 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 2.7e-85 320.5 376 51.1
PRCOL_00006313 Prasinoderma coloniale HOM05D007729 ORTHO05D009724 7.4e-67 259.2 565 32.0
Aqoxy2G02815 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 4.2e-46 190.3 166 56.0
CARHR009140 Cardamine hirsuta HOM05D007729 ORTHO05D009724 1.8e-44 184.9 189 51.3
Haze_25193 Corylus avellana HOM05D007729 ORTHO05D009724 8.5e-39 166.0 191 49.2
Haze_15474 Corylus avellana HOM05D000683 ORTHO05D000507 8.0e-29 132.9 159 48.4
MD12G1208200 Malus domestica HOM05D007729 ORTHO05D009724 8.5e-23 112.8 120 50.8
Haze_25604 Corylus avellana HOM05D007729 ORTHO05D009724 8.0e-21 106.3 124 46.8
PGSC0003DMG400033855 Solanum tuberosum HOM05D007729 ORTHO05D009724 3.0e-12 77.8 83 47.0


User provided reference genes

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