Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 0.0e+00 1408.3 816 100.0
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.3e-237 827.0 838 63.1
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 3.0e-223 779.2 823 59.3
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.1e-220 770.8 819 61.4
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 2.6e-219 766.1 821 60.4
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 9.3e-217 757.7 823 60.4
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.2e-216 757.3 832 60.2
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.6e-213 746.9 824 59.7
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.4e-212 743.8 836 59.8
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 5.3e-212 741.9 824 59.5
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 7.7e-211 738.0 820 59.6
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.0e-210 737.6 838 58.2
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.0e-207 727.6 885 54.8
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 8.8e-207 724.5 828 54.5
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.5e-206 723.8 803 58.3
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 7.4e-206 721.5 803 58.2
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 5.9e-203 711.8 826 57.3
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.2e-202 709.9 821 55.7
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 1.4e-201 707.2 825 60.5
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 9.4e-201 704.5 826 56.8
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 2.7e-200 703.0 810 57.4
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 3.6e-200 702.6 829 56.1
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 3.6e-200 702.6 842 54.3
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.0e-199 701.0 849 56.9
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 6.3e-197 691.8 823 58.3
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 5.9e-195 685.3 826 55.3
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 1.7e-194 683.7 822 57.3
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 5.0e-194 682.2 783 61.2
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 2.5e-193 679.9 822 56.7
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 5.5e-193 678.7 825 56.5
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.1e-192 676.8 820 55.0
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 2.0e-190 670.2 822 55.0
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 4.4e-190 669.1 823 56.6
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 7.5e-190 668.3 821 55.1
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 9.7e-190 667.9 823 56.6
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 9.7e-190 667.9 822 56.8
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.3e-189 667.5 822 55.8
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 3.7e-189 666.0 794 51.5
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.8e-188 663.7 803 50.9
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 2.4e-188 663.3 817 50.1
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 5.3e-188 662.1 817 56.4
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 7.0e-188 661.8 837 53.3
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 4.5e-187 659.1 821 52.1
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 1.7e-186 657.1 818 49.8
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.0e-186 655.6 842 54.6
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 5.0e-186 655.6 834 53.6
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.9e-185 653.7 828 54.3
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 3.6e-184 649.4 825 48.2
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 3.0e-183 646.4 819 50.2
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 5.2e-183 645.6 791 49.6
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.5e-182 644.0 828 54.2
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 1.7e-181 640.6 833 52.9
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 4.1e-180 636.0 798 55.1
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.0e-178 631.3 850 52.1
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 5.0e-178 629.0 828 52.5
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 6.5e-178 628.6 814 54.1
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 8.6e-178 628.2 845 53.6
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.2e-176 624.4 818 52.8
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.6e-176 624.0 820 52.7
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 3.0e-175 619.8 821 49.7
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 8.8e-175 618.2 688 59.3
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 7.5e-174 615.1 800 53.8
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 7.5e-174 615.1 797 53.8
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 1.7e-173 614.0 830 52.0
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 2.2e-173 613.6 790 49.0
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 3.7e-173 612.8 817 48.6
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 4.1e-172 609.4 844 47.4
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 7.0e-172 608.6 795 53.0
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.2e-171 607.8 848 50.2
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.3e-170 604.4 789 53.0
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 2.9e-170 603.2 828 51.6
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 3.8e-170 602.8 826 50.1
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 3.3e-169 599.7 815 50.6
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 7.3e-169 598.6 827 52.8
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.6e-168 597.4 780 48.8
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 6.1e-168 595.5 818 52.2
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 3.4e-166 589.7 758 53.8
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 2.2e-165 587.0 810 50.9
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 1.2e-163 581.3 834 44.8
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 7.8e-163 578.6 798 50.6
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 5.0e-162 575.9 795 52.1
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 8.6e-162 575.1 815 50.9
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.1e-160 570.5 856 48.6
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.3e-157 561.2 684 56.9
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 2.2e-157 560.5 833 48.7
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 2.9e-157 560.1 803 52.1
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.9e-157 559.3 703 55.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 6.4e-157 558.9 803 52.1
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.4e-156 557.8 801 49.1
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 3.2e-156 556.6 806 52.0
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 2.7e-155 553.5 806 51.9
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 2.3e-154 550.4 811 48.6
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 4.3e-153 546.2 826 49.9
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.1e-148 531.6 802 49.1
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 5.6e-145 519.2 495 57.2
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.6e-144 517.7 788 48.7
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 2.8e-144 516.9 799 48.7
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 6.2e-136 489.2 829 44.6
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.4e-135 488.0 735 50.5
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 8.7e-130 468.8 804 46.9
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.5e-121 441.4 858 44.8
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.2e-117 427.6 875 42.6
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 1.4e-116 424.9 494 50.6
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.3e-114 417.5 901 41.0
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 7.4e-113 412.5 871 42.3
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.3e-112 411.8 820 45.2
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.4e-90 338.6 771 40.7
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 3.0e-90 337.4 847 38.7
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 3.3e-89 334.0 813 37.6
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 2.0e-78 298.1 583 38.9
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 2.5e-76 291.2 573 44.9
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 2.7e-67 261.2 253 56.1
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 8.8e-66 256.1 497 37.4
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.8e-63 248.4 497 37.0
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.7e-54 218.0 806 30.3
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 4.7e-51 207.2 465 35.9
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 8.9e-50 203.0 323 42.1
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.5e-41 175.6 194 54.6
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 9.2e-39 166.4 189 51.9
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 2.3e-37 161.8 716 33.9
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 3.4e-33 147.9 216 42.1
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 7.5e-33 146.7 114 64.0
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 4.1e-31 141.0 376 31.6
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 9.2e-31 139.8 442 29.9
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 4.7e-27 127.5 147 50.3
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.3e-21 109.4 247 36.4
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 2.4e-18 98.6 251 33.9
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 2.9e-16 91.7 89 52.8
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 8.7e-13 80.1 90 46.7
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 3.3e-12 78.2 140 39.3
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 1.5e-09 69.3 68 54.4
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 4.5e-09 67.8 66 54.5
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 2.9e-08 65.1 67 52.2
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 1.4e-07 62.8 84 46.4
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 3.2e-07 61.6 304 28.3
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 3.2e-07 61.6 49 63.3
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 9.3e-07 60.1 66 51.5
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 1.6e-06 59.3 80 46.2


User provided reference genes

Program Settings