Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000294m.g Citrus clementina HOM05D001090 ORTHO05D008663 0.0e+00 1666.4 822 100.0
Atru.chr13.1551 Acer truncatum HOM05D001090 ORTHO05D008663 0.0e+00 1098.2 828 66.9
TWI34G0871 Tripterygium wilfordii HOM05D001090 ORTHO05D008663 1.3e-269 933.3 833 59.2
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 8.4e-266 920.6 831 58.2
Thecc.08G132300 Theobroma cacao HOM05D001090 ORTHO05D008663 4.6e-264 914.8 826 57.6
Cfa018121 Carpinus fangiana HOM05D001090 ORTHO05D008663 1.9e-262 909.4 866 56.6
Manes.18G082000 Manihot esculenta HOM05D001090 ORTHO05D008663 3.7e-261 905.2 832 57.7
Dinv14668 Davidia involucrata HOM05D001090 ORTHO05D008663 5.8e-259 897.9 861 55.5
Gorai.005G088100 Gossypium raimondii HOM05D001090 ORTHO05D008663 4.2e-257 891.7 817 57.0
QL09p032725 Quercus lobata HOM05D001090 ORTHO05D008663 1.2e-256 890.2 835 57.2
Duzib041G0130 Durio zibethinus HOM05D001090 ORTHO05D008663 9.6e-254 880.6 819 57.1
Potri.019G066500 Populus trichocarpa HOM05D001090 ORTHO05D008663 2.0e-251 872.8 839 55.7
COL.COLO4_05689 Corchorus olitorius HOM05D001090 ORTHO05D008663 7.6e-251 870.9 839 55.9
Prupe.1G490500 Prunus persica HOM05D001090 ORTHO05D008663 1.3e-250 870.2 842 55.1
CiPaw.15G032400 Carya illinoinensis HOM05D001090 ORTHO05D008663 1.0e-247 860.5 848 55.4
THA.LOC104813679 Tarenaya hassleriana HOM05D001090 ORTHO05D008663 9.0e-244 847.4 831 53.4
CANSAT56G3793 Cannabis sativa HOM05D001090 ORTHO05D008663 1.5e-243 846.7 844 53.2
FvH4_2g27740 Fragaria vesca HOM05D001090 ORTHO05D008663 2.2e-242 842.8 832 53.7
CSS0021561 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 5.0e-242 841.6 855 54.2
Cpa.g.sc64.146 Carica papaya HOM05D001090 ORTHO05D008663 1.3e-239 833.6 828 51.7
RcHm_v2.0_Chr6g0296591 Rosa chinensis HOM05D001090 ORTHO05D008663 1.8e-239 833.2 835 53.4
Sabra19G0078400 Salix brachista HOM05D001090 ORTHO05D008663 1.8e-239 833.2 842 54.0
Gohir.D02G078900 Gossypium hirsutum HOM05D001090 ORTHO05D008663 3.9e-239 832.0 774 56.2
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.9e-238 829.7 824 53.5
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.5e-238 829.3 821 54.1
Gohir.A02G071600 Gossypium hirsutum HOM05D001090 ORTHO05D008663 3.3e-238 828.9 774 56.1
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.6e-235 819.3 826 53.4
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.4e-235 818.9 824 53.5
Actinidia29485 Actinidia chinensis HOM05D001090 ORTHO05D008663 9.4e-233 810.8 859 52.6
Hma1.2p1_1129F.1_g259860 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 1.7e-229 800.0 854 52.1
Rhsim11G0070600 Rhododendron simsii HOM05D001090 ORTHO05D008663 1.1e-225 787.3 835 52.5
AL1G34800 Arabidopsis lyrata HOM05D001090 ORTHO05D008663 8.0e-224 781.2 829 50.8
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 1.8e-223 780.0 824 51.7
BcaB07g32158 Brassica carinata HOM05D001090 ORTHO05D008663 1.7e-221 773.5 839 50.4
A06p17720 Brassica napus HOM05D001090 ORTHO05D008663 6.3e-221 771.5 830 50.7
BraA06t24864Z Brassica rapa HOM05D001090 ORTHO05D008663 3.1e-220 769.2 832 50.5
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 9.1e-220 767.7 848 50.5
AT1G21651 Arabidopsis thaliana HOM05D001090 ORTHO05D008663 1.2e-219 767.3 831 49.8
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 1.9e-217 760.0 822 49.5
BcaC05g26082 Brassica carinata HOM05D001090 ORTHO05D008663 2.5e-217 759.6 842 50.2
Nn1g08979 Nelumbo nucifera HOM05D001090 ORTHO05D008663 1.6e-216 756.9 869 48.4
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 2.7e-216 756.1 824 49.6
C05p20620 Brassica napus HOM05D001090 ORTHO05D008663 3.6e-216 755.7 834 50.0
BolC5t30760H Brassica oleracea HOM05D001090 ORTHO05D008663 3.6e-216 755.7 834 50.0
Glyma.06G116800 Glycine max HOM05D001090 ORTHO05D008663 4.4e-214 748.8 843 49.2
Carub.0001s2108 Capsella rubella HOM05D001090 ORTHO05D008663 8.2e-213 744.6 829 49.5
Phvul.009G129300 Phaseolus vulgaris HOM05D001090 ORTHO05D008663 1.4e-212 743.8 832 49.4
Lalb_Chr08g0241151 Lupinus albus HOM05D001090 ORTHO05D008663 2.0e-211 740.0 842 48.8
CsaV3_1G032930 Cucumis sativus L. HOM05D001090 ORTHO05D008663 7.7e-211 738.0 851 48.2
Lj1g0016545 Lotus japonicus HOM05D001090 ORTHO05D008663 8.5e-210 734.6 848 48.2
VMungo1309G2387 Vigna mungo HOM05D001090 ORTHO05D008663 1.9e-209 733.4 837 48.7
DCAR_018875 Daucus carota HOM05D001090 ORTHO05D008663 5.5e-209 731.9 852 45.0
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 3.6e-208 729.2 878 46.5
MELO3C002690.2 Cucumis melo HOM05D001090 ORTHO05D008663 2.3e-207 726.5 852 48.0
Aqoxy6G00325 Aquilegia oxysepala HOM05D001090 ORTHO05D008663 1.5e-206 723.8 850 46.5
arahy.Tifrunner.gnm1.ann1.NR7S6L Arachis hypogaea HOM05D001090 ORTHO05D008663 3.4e-206 722.6 860 48.6
arahy.Tifrunner.gnm1.ann1.FIZF7Q Arachis hypogaea HOM05D001090 ORTHO05D008663 1.7e-205 720.3 856 48.6
Sc15g0007530 Simmondsia chinensis HOM05D001090 ORTHO05D008663 2.7e-203 713.0 871 48.1
PSO017G6856 Papaver somniferum HOM05D001090 ORTHO05D008663 1.8e-199 700.3 901 45.4
EL10Ac7g17319 Beta vulgaris HOM05D001090 ORTHO05D008663 6.8e-199 698.4 834 48.1
MSTRG.25363 Avicennia marina HOM05D001090 ORTHO05D008663 1.3e-197 694.1 860 45.7
Lsat_1_v5_gn_1_9840 Lactuca sativa HOM05D001090 ORTHO05D008663 1.8e-196 690.3 840 46.3
vmacro16445 Vaccinium macrocarpon HOM05D001090 ORTHO05D008663 1.8e-196 690.3 1004 43.4
Lj7A347T47 Lonicera japonica HOM05D001090 ORTHO05D008663 2.3e-194 683.3 764 50.1
Solyc11g005030.3 Solanum lycopersicum HOM05D001090 ORTHO05D008663 3.8e-194 682.6 850 44.2
PGSC0003DMG401006052 Solanum tuberosum HOM05D001090 ORTHO05D008663 3.8e-194 682.6 848 44.8
Aa31LG7G5630 Aethionema arabicum HOM05D001090 ORTHO05D008663 1.9e-193 680.2 828 48.6
Hund17320 Selenicereus undatus HOM05D001090 ORTHO05D008663 9.5e-193 677.9 827 46.9
Sopen11g001050 Solanum pennellii HOM05D001090 ORTHO05D008663 1.6e-192 677.2 851 43.9
GSVIVG01008814001 Vitis vinifera HOM05D001090 ORTHO05D008663 2.8e-192 676.4 749 51.1
Actinidia03422 Actinidia chinensis HOM05D001090 ORTHO05D008663 2.4e-188 663.3 852 47.5
ECA238G2411 Erigeron canadensis HOM05D001090 ORTHO05D008663 1.2e-187 661.0 833 43.9
Peaxi162Scf01003g00015 Petunia axillaris HOM05D001090 ORTHO05D008663 6.2e-184 648.7 834 40.6
Ah.15g092020 Amaranthus hybridus HOM05D001090 ORTHO05D008663 1.5e-182 644.0 841 45.4
Oeu021884.2 Olea europaea HOM05D001090 ORTHO05D008663 3.4e-182 642.9 909 39.5
Nitab4.5_0002045g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 8.3e-181 638.3 867 40.4
Nitab4.5_0001168g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 9.2e-180 634.8 853 39.5
PSO170G6226 Papaver somniferum HOM05D001090 ORTHO05D008663 1.7e-178 630.6 889 43.6
SalBow7G3344 Salvia bowleyana HOM05D001090 ORTHO05D008663 1.7e-178 630.6 844 43.5
SalBow7G3826 Salvia bowleyana HOM05D001090 ORTHO05D008663 6.6e-178 628.6 844 43.4
Psat5g085040 Pisum sativum HOM05D001090 ORTHO05D008663 8.1e-176 621.7 820 43.7
HanXRQChr02g0041931 Helianthus annuus HOM05D001090 ORTHO05D008663 4.4e-174 615.9 836 43.8
Sed0003425 Sechium edule HOM05D001090 ORTHO05D008663 4.4e-174 615.9 759 46.8
Migut.C01061 Erythranthe guttata HOM05D001090 ORTHO05D008663 5.4e-172 609.0 855 39.9
Sp1g19180 Schrenkiella parvula HOM05D001090 ORTHO05D008663 3.9e-162 576.2 656 48.9
Eucgr.F03832 Eucalyptus grandis HOM05D001090 ORTHO05D008663 5.8e-158 562.4 764 41.8
ATR0584G005 Amborella trichopoda HOM05D001090 ORTHO05D008663 4.8e-152 542.7 861 39.0
SGA_v2.0_scaffold24G10429 Striga asiatica HOM05D001090 ORTHO05D008663 1.7e-141 507.7 843 36.7
TPR.G13463 Trifolium pratense HOM05D001090 ORTHO05D008663 7.1e-140 502.3 614 46.9
AUR62040524 Chenopodium quinoa HOM05D001090 ORTHO05D008663 4.6e-139 499.6 809 39.3
HPP92_013748 Vanilla planifolia HOM05D001090 ORTHO05D008663 2.3e-138 497.3 842 38.7
unitig_0.g2283 Utricularia gibba HOM05D001090 ORTHO05D008663 5.1e-130 469.5 846 35.6
Hma1.2p1_0014F.1_g010110 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 3.1e-119 433.7 576 43.8
Ca_16603_v3 Cicer arietinum L. HOM05D001090 ORTHO05D008663 1.4e-106 391.7 566 41.0
Medtr3g088535 Medicago truncatula HOM05D001090 ORTHO05D008663 3.7e-104 383.6 559 40.1
SHI09188 Sapria himalayana HOM05D001090 ORTHO05D008663 7.0e-103 379.4 574 37.6
Cc10_g12630 Coffea canephora HOM05D001090 ORTHO05D008663 8.5e-101 372.5 450 43.8
Medtr3g088545 Medicago truncatula HOM05D001090 ORTHO05D008663 2.2e-93 347.8 273 65.6
Os05g0422300 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D008663 6.1e-91 339.7 696 32.6
Zm00001eb337940 Zea mays HOM05D001090 ORTHO05D008663 5.2e-90 336.7 687 33.3
SHI09187 Sapria himalayana HOM05D001090 ORTHO05D008663 7.0e-87 326.2 313 57.2
SEGI_33865 Sequoiadendron giganteum HOM05D001090 ORTHO05D008663 7.0e-87 326.2 746 32.3
CDE02G2378 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 3.6e-83 313.9 290 55.2
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 1.6e-70 271.9 231 63.2
CAN.G342.10 Capsicum annuum HOM05D001090 ORTHO05D008663 6.2e-67 260.0 559 30.2
Pp3c14_11620 Physcomitrium patens HOM05D001090 ORTHO05D008663 4.6e-62 243.8 915 28.7
SMO011G0047 Selaginella moellendorffii HOM05D001090 ORTHO05D008663 1.1e-47 196.1 819 26.1
AagrBONN_evm.TU.Sc2ySwM_368.1353 Anthoceros agrestis HOM05D001090 ORTHO05D008663 2.3e-45 188.3 295 40.0
Glyma.10G228500 Glycine max HOM05D001090 ORTHO05D008663 6.6e-45 186.8 259 40.9
Mapoly0020s0076 Marchantia polymorpha HOM05D001090 ORTHO05D008663 1.7e-40 172.2 869 25.2
Dinv40410 Davidia involucrata HOM05D001090 ORTHO05D008663 1.1e-36 159.5 99 71.7
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 9.6e-28 129.8 159 43.4
CSS0004473 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 5.1e-21 107.5 162 41.4
CSS0019679 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 7.4e-20 103.6 162 40.7
CDE08G1173 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 3.3e-12 78.2 139 35.3
CSS0043152 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.2e-09 69.7 162 35.2
SEGI_29052 Sequoiadendron giganteum HOM05D001090 ORTHO05D008663 1.2e-09 69.7 84 38.1
Lsat_1_v5_gn_3_23020 Lactuca sativa HOM05D001090 ORTHO05D008663 1.5e-09 69.3 50 58.0
Dinv40409 Davidia involucrata HOM05D001090 ORTHO05D008663 2.6e-09 68.6 56 50.0
TAR625G1206 Trochodendron aralioides HOM05D001090 ORTHO05D008663 5.9e-09 67.4 80 46.2
GSVIVG01022679001 Vitis vinifera HOM05D001090 ORTHO05D002781 5.9e-09 67.4 74 45.9
Thhalv10020683m.g Eutrema salsugineum HOM05D000453 ORTHO05D000387 1.7e-08 65.9 345 26.7
TWI36G1770 Tripterygium wilfordii HOM05D000453 ORTHO05D000387 2.9e-08 65.1 147 30.6
HanXRQChr10g0316851 Helianthus annuus HOM05D000066 ORTHO05D009093 5.0e-08 64.3 49 57.1
SEGI_30951 Sequoiadendron giganteum HOM05D001090 ORTHO05D002119 6.5e-08 63.9 78 43.6
CBR_g8279 Chara braunii HOM05D001090 ORTHO05D008663 1.1e-07 63.2 76 43.4
QL03p056285 Quercus lobata HOM05D000453 ORTHO05D000387 1.1e-07 63.2 144 31.9
THA.LOC104825546 Tarenaya hassleriana HOM05D000453 ORTHO05D000387 1.4e-07 62.8 223 24.7
Carub.0001s2558 Capsella rubella HOM05D000453 ORTHO05D000387 1.9e-07 62.4 213 36.2
COL.COLO4_23512 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.9e-07 62.4 148 31.1
BcaB07g32412 Brassica carinata HOM05D000453 ORTHO05D000387 2.5e-07 62.0 161 34.8
Glyma.08G130300 Glycine max HOM05D000453 ORTHO05D000387 3.2e-07 61.6 143 29.4
DCAR_007110 Daucus carota HOM05D000453 ORTHO05D000387 4.2e-07 61.2 151 30.5
SMO340G0134 Selaginella moellendorffii HOM05D000453 ORTHO05D000387 4.2e-07 61.2 172 29.1
AL1G40410 Arabidopsis lyrata HOM05D000453 ORTHO05D000387 5.5e-07 60.8 143 30.8
CSS0030841 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 5.5e-07 60.8 87 44.8
vmacro01111 Vaccinium macrocarpon HOM05D000453 ORTHO05D000387 5.5e-07 60.8 143 30.1
AT1G24530 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 7.2e-07 60.5 142 28.9
Medtr3g078380 Medicago truncatula HOM05D000453 ORTHO05D000387 7.2e-07 60.5 157 33.8
Pp3c14_3010 Physcomitrium patens HOM05D001090 ORTHO05D008663 9.4e-07 60.1 81 40.7
CiPaw.05G177600 Carya illinoinensis HOM05D000453 ORTHO05D000387 1.2e-06 59.7 143 30.8
TPR.G6274 Trifolium pratense HOM05D000453 ORTHO05D000387 1.2e-06 59.7 143 29.4
AL3G32340 Arabidopsis lyrata HOM05D000453 ORTHO05D000387 1.6e-06 59.3 298 25.5
AUR62024219 Chenopodium quinoa HOM05D000453 ORTHO05D000387 1.6e-06 59.3 154 28.6
Duzib248G0831 Durio zibethinus HOM05D000453 ORTHO05D000387 1.6e-06 59.3 142 28.2
Lj5P133T72 Lonicera japonica HOM05D000453 ORTHO05D000387 1.6e-06 59.3 150 30.7
Prupe.1G449400 Prunus persica HOM05D000453 ORTHO05D006365 1.6e-06 59.3 124 29.0
SEGI_17762 Sequoiadendron giganteum HOM05D000453 ORTHO05D000387 1.6e-06 59.3 124 32.3
GSVIVG01005091001 Vitis vinifera HOM05D000453 ORTHO05D000387 1.6e-06 59.3 158 28.5
CARHR026560 Cardamine hirsuta HOM05D000453 ORTHO05D000387 2.1e-06 58.9 144 29.9
Gorai.002G188800 Gossypium raimondii HOM05D000453 ORTHO05D000387 2.1e-06 58.9 142 29.6
Lj4g0008572 Lotus japonicus HOM05D000453 ORTHO05D000387 2.1e-06 58.9 144 28.5
BolC5t31025H Brassica oleracea HOM05D000453 ORTHO05D000387 2.7e-06 58.5 159 31.4
BraA01t03631Z Brassica rapa HOM05D000453 ORTHO05D000387 2.7e-06 58.5 282 25.9
Dinv14749 Davidia involucrata HOM05D000453 ORTHO05D000387 2.7e-06 58.5 143 31.5
Prupe.1G241300 Prunus persica HOM05D000453 ORTHO05D000387 2.7e-06 58.5 142 28.9
A01p35500 Brassica napus HOM05D000453 ORTHO05D000387 3.6e-06 58.2 282 25.9
C05p23250 Brassica napus HOM05D000453 ORTHO05D000387 3.6e-06 58.2 158 31.0
MD13G1105300 Malus domestica HOM05D000453 ORTHO05D000387 3.6e-06 58.2 139 28.8
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 3.6e-06 58.2 127 30.7
Thecc.02G266100 Theobroma cacao HOM05D000453 ORTHO05D000387 3.6e-06 58.2 148 29.1
VMungo0251G1177 Vigna mungo HOM05D000453 ORTHO05D000387 3.6e-06 58.2 130 30.8
A09p38850 Brassica napus HOM05D000453 ORTHO05D000387 4.6e-06 57.8 229 32.3
Dinv11488 Davidia involucrata HOM05D002141 ORTHO05D002119 4.6e-06 57.8 96 36.5
Eucgr.F01502 Eucalyptus grandis HOM05D000453 ORTHO05D000387 4.6e-06 57.8 186 27.4
Sp3g17040 Schrenkiella parvula HOM05D000453 ORTHO05D000387 4.6e-06 57.8 282 25.5
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 4.6e-06 57.8 384 24.2
Ah.03g133510 Amaranthus hybridus HOM05D000453 ORTHO05D000387 6.1e-06 57.4 152 30.9
Aqoxy5G03649 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 6.1e-06 57.4 143 28.7
BcaC09g48865 Brassica carinata HOM05D000453 ORTHO05D000387 6.1e-06 57.4 282 25.5
C01p45040 Brassica napus HOM05D000453 ORTHO05D000387 6.1e-06 57.4 282 25.5
BolC1t04472H Brassica oleracea HOM05D000453 ORTHO05D000387 6.1e-06 57.4 282 25.5
BraA09t39392Z Brassica rapa HOM05D000453 ORTHO05D000387 6.1e-06 57.4 229 32.3
RcHm_v2.0_Chr4g0432531 Rosa chinensis HOM05D000453 ORTHO05D000387 6.1e-06 57.4 142 27.5
AagrBONN_evm.TU.Sc2ySwM_340.375 Anthoceros agrestis HOM05D000453 ORTHO05D000387 7.9e-06 57.0 77 39.0
BcaC05g26709 Brassica carinata HOM05D000453 ORTHO05D000387 7.9e-06 57.0 144 29.2
A03p40920 Brassica napus HOM05D000453 ORTHO05D000387 7.9e-06 57.0 281 25.6
C03p49950 Brassica napus HOM05D000453 ORTHO05D000387 7.9e-06 57.0 281 25.6
BraA03t13251Z Brassica rapa HOM05D000453 ORTHO05D000387 7.9e-06 57.0 281 25.6
Eucgr.K02772 Eucalyptus grandis HOM05D000453 ORTHO05D000387 7.9e-06 57.0 160 30.6
Solyc03g111780.1 Solanum lycopersicum HOM05D000453 ORTHO05D000387 7.9e-06 57.0 147 25.9
TAR371G0360 Trochodendron aralioides HOM05D000453 ORTHO05D000387 7.9e-06 57.0 144 29.2
unitig_46.g18501 Utricularia gibba HOM05D005428 ORTHO05D006876 7.9e-06 57.0 275 29.1
unitig_47.g30761 Utricularia gibba HOM05D000453 ORTHO05D006876 7.9e-06 57.0 275 29.1
unitig_52.g17601 Utricularia gibba HOM05D002141 ORTHO05D002119 7.9e-06 57.0 96 35.4
GSVIVG01007589001 Vitis vinifera HOM05D000453 ORTHO05D000387 7.9e-06 57.0 148 30.4


User provided reference genes

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