Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1701.4 914 100.0
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1355.5 896 80.5
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1296.6 890 77.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1286.2 893 76.5
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1286.2 914 74.4
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1266.1 895 74.4
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1263.4 890 75.1
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1261.9 918 73.1
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1261.1 895 74.9
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1260.4 889 75.1
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1260.0 893 75.4
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1259.6 889 75.0
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1258.4 889 75.0
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1256.9 902 74.9
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1254.2 909 73.2
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1248.0 898 73.8
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1239.2 886 74.0
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1233.4 915 71.7
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1231.5 906 73.2
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1230.7 922 71.6
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1226.5 890 73.5
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1224.9 920 71.8
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1224.5 930 71.1
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1222.6 934 70.2
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1221.1 886 74.2
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1221.1 892 73.5
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1221.1 891 72.7
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1218.8 937 69.9
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1217.2 869 73.6
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1214.9 903 72.4
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1214.1 888 73.3
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1211.8 921 70.0
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1210.7 901 72.4
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1209.9 887 72.5
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1209.5 898 72.4
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1201.8 950 69.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1199.1 917 69.0
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1198.7 880 73.1
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1195.6 949 69.1
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1194.1 886 72.3
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1193.7 907 70.1
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1191.0 902 71.4
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1187.2 911 69.3
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1184.9 911 68.8
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1184.1 898 69.9
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1181.8 885 70.2
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1181.8 902 70.1
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1181.0 873 71.9
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1178.7 916 68.1
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1178.3 915 68.5
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1177.9 916 68.1
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1177.9 904 69.2
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1177.5 905 69.6
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1176.8 898 69.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1176.4 905 69.1
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1175.6 898 69.6
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1174.8 898 69.2
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1174.8 891 69.0
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1170.2 905 68.3
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1169.8 905 68.3
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1167.9 948 67.3
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1167.5 893 70.5
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1164.8 898 69.0
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1164.4 915 69.1
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1163.3 914 67.2
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1157.9 975 65.6
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1155.6 822 73.1
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1149.4 896 68.1
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1147.5 920 68.2
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1146.7 937 66.6
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1141.7 820 72.1
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1141.3 823 72.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1140.2 903 67.9
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1137.9 918 65.9
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1136.7 961 63.9
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1136.7 906 65.8
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1134.0 889 67.8
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1133.6 845 69.6
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1133.6 901 66.6
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1130.5 913 66.2
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1126.3 951 64.8
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1123.2 894 67.0
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1121.7 909 67.3
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1119.8 901 66.9
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1117.8 926 65.2
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1115.5 887 68.3
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1114.8 885 68.2
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1113.2 927 64.9
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1107.4 815 71.0
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1104.7 879 67.7
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1098.6 923 64.1
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1093.2 670 85.5
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1077.0 889 65.1
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 6.3e-312 1074.7 889 65.2
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.3e-311 1072.8 914 64.3
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 1.9e-311 1072.4 888 64.3
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.5e-311 1072.0 746 73.7
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 1.3e-310 1069.7 859 64.1
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 4.0e-309 1064.7 846 65.7
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 6.2e-302 1040.8 899 64.1
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 7.6e-292 1007.3 834 64.7
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.2e-289 1000.0 921 59.3
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 2.1e-289 999.2 685 77.1
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.9e-287 992.6 887 61.3
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 6.9e-285 984.2 825 61.8
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.7e-283 979.5 661 77.2
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.4e-277 959.9 661 76.1
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 3.2e-274 948.7 898 57.8
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 2.0e-260 902.9 865 56.0
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.5e-260 901.7 744 66.0
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 5.9e-260 901.4 880 56.1
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.3e-259 900.2 874 52.7
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 6.7e-256 887.9 828 54.6
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 7.7e-252 874.4 649 71.5
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.3e-243 847.0 835 53.2
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 7.5e-223 778.1 564 70.0
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 7.7e-220 768.1 625 66.1
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.3e-216 756.5 630 65.2
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.6e-209 733.8 842 46.9
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.4e-199 699.5 599 60.9
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 4.9e-198 695.7 630 60.5
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-187 661.0 868 49.3
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.5e-186 657.5 541 63.6
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 7.4e-170 602.1 565 54.0
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 5.5e-157 559.3 524 57.4
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 3.9e-131 473.4 935 34.7
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 2.6e-130 470.7 912 38.4
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 5.7e-130 469.5 403 61.3
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-129 468.0 323 75.2
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 5.3e-120 436.4 846 33.0
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 8.0e-116 422.5 491 49.5
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 4.4e-114 416.8 296 75.0
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.1e-101 375.6 875 31.2
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 5.6e-101 373.2 265 72.1
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 6.1e-100 369.8 494 47.6
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.4e-99 368.6 362 55.0
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-98 365.2 558 41.9
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.4e-98 364.0 408 47.3
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 4.1e-96 357.1 558 43.5
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.6e-95 355.1 297 64.0
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.5e-93 347.8 293 64.2
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.6e-87 327.0 220 75.5
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 6.2e-84 316.6 521 40.7
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 3.7e-81 307.4 281 63.3
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 3.3e-77 294.3 397 46.9
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 2.3e-75 288.1 244 60.7
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.7e-68 263.8 593 33.6
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 3.4e-66 257.7 261 55.6
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 5.8e-66 256.9 428 42.1
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 2.9e-65 254.6 219 56.2
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 3.3e-61 241.1 177 72.3
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.8e-59 235.3 426 41.8
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 9.9e-58 229.6 416 42.1
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 1.4e-56 225.7 176 69.9
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 3.2e-56 224.6 249 49.0
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.6e-47 195.7 134 73.1
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.1e-43 183.0 197 53.8
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 3.2e-40 171.4 203 49.8
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 6.0e-39 167.2 334 37.4
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 8.7e-38 163.3 233 43.3
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.3e-37 161.4 124 66.1
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 9.7e-37 159.8 160 56.2
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 1.3e-36 159.5 92 82.6
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.0e-33 149.8 140 60.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 7.2e-32 143.7 408 34.1
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 9.3e-32 143.3 140 59.3
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.8e-28 131.7 184 46.2
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.4e-27 129.4 79 79.7
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.7e-25 122.5 170 45.9
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.9e-25 121.7 74 78.4
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.9e-25 121.7 74 78.4
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.7e-23 115.2 162 44.4
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 8.8e-22 110.2 122 48.4
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.0e-21 109.0 158 43.0
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 4.4e-21 107.8 163 41.7
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.1e-19 103.2 72 70.8
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 2.2e-17 95.5 84 59.5
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.2e-14 84.3 66 68.2
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.5e-08 64.3 40 80.0
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 9.4e-08 63.5 52 65.4
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 6.7e-06 57.4 166 32.5


User provided reference genes

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