Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 0.0e+00 1727.6 924 100.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.5e-178 630.9 995 45.6
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 1.2e-175 621.3 997 44.4
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.6e-172 610.9 1040 41.0
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 9.1e-168 595.1 1045 41.0
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.5e-167 594.3 1058 41.1
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 7.7e-167 592.0 1062 42.2
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 6.3e-161 572.4 1067 39.8
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.8e-160 570.9 1066 38.8
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 9.1e-160 568.5 1061 38.3
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 3.8e-158 563.1 1000 40.2
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.5e-157 560.5 998 39.7
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 4.2e-157 559.7 999 40.1
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 9.4e-157 558.5 1054 41.0
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 5.2e-155 552.7 975 38.9
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 7.5e-154 548.9 1060 38.5
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 3.7e-153 546.6 1023 41.7
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 6.3e-153 545.8 626 51.6
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 1.8e-152 544.3 1073 39.7
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 5.2e-147 526.2 1004 39.1
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.0e-146 524.2 955 40.0
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 2.7e-143 513.8 1042 40.9
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 2.3e-142 510.8 1017 39.6
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 9.5e-141 505.4 1029 38.9
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 6.8e-139 499.2 1011 38.7
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.3e-137 495.0 622 47.3
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 1.3e-137 495.0 985 38.0
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 1.8e-136 491.1 561 50.1
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.0e-136 489.2 987 37.5
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.0e-135 487.6 1018 36.8
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.9e-135 486.1 1018 36.9
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.0e-134 485.3 1039 39.5
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.5e-130 471.5 1023 36.0
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.4e-129 466.1 1007 36.4
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 6.0e-127 459.5 881 39.0
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 2.2e-121 441.0 1139 33.6
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.1e-120 438.7 993 36.0
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 4.1e-120 436.8 984 34.7
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.1e-116 424.5 1018 34.1
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 2.8e-116 424.1 643 40.4
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 3.6e-116 423.7 987 35.7
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.4e-115 421.8 978 34.4
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.8e-115 421.4 1019 34.7
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 6.8e-115 419.5 884 34.4
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 2.0e-114 417.9 985 35.2
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 5.8e-114 416.4 1119 32.0
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 7.6e-114 416.0 970 34.8
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 1.3e-113 415.2 1118 32.5
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.7e-113 414.8 1064 34.5
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 2.2e-113 414.5 997 34.4
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 2.9e-113 414.1 1105 31.9
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 4.9e-113 413.3 993 33.2
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 3.2e-112 410.6 990 34.4
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 5.4e-112 409.8 977 32.9
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 2.1e-111 407.9 986 33.5
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 2.7e-111 407.5 1068 34.6
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.0e-110 405.6 891 33.7
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 2.5e-109 401.0 997 33.2
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 2.5e-109 401.0 991 33.4
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 7.3e-109 399.4 1014 32.4
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 9.6e-109 399.1 1088 32.4
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.2e-108 398.7 950 33.8
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 3.6e-108 397.1 985 33.5
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.3e-105 388.7 1094 31.8
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 1.7e-105 388.3 616 41.9
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 4.9e-105 386.7 636 38.8
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.1e-104 385.6 941 32.8
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 3.2e-104 384.0 1004 31.8
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.2e-103 382.1 980 34.7
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 3.5e-103 380.6 981 32.6
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 7.8e-103 379.4 1007 32.0
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 1.7e-102 378.3 1006 32.4
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 8.7e-102 375.9 957 32.4
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.3e-101 374.0 583 40.3
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 4.3e-101 373.6 964 32.3
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.4e-99 368.6 573 40.7
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 2.4e-99 367.9 979 30.9
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.4e-96 358.6 999 31.8
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.4e-96 358.6 993 32.6
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 9.3e-96 355.9 999 30.6
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 6.0e-95 353.2 966 32.4
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 2.4e-91 341.3 530 40.4
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 2.4e-91 341.3 960 31.9
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 3.1e-91 340.9 958 31.8
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 9.0e-91 339.3 969 31.3
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.5e-90 338.6 502 41.0
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.0e-90 338.2 655 35.7
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 2.9e-89 334.3 961 31.1
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 9.3e-88 329.3 960 30.8
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 9.3e-88 329.3 970 31.3
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 2.1e-87 328.2 948 32.0
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.8e-86 325.1 577 37.1
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 4.3e-85 320.5 971 30.4
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 8.4e-81 306.2 372 45.4
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 2.5e-80 304.7 372 44.9
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 2.8e-76 291.2 543 35.7
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 2.1e-71 275.0 718 34.7
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 2.3e-70 271.6 182 69.2
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.8e-62 245.4 833 31.2
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 6.7e-62 243.4 222 60.8
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.3e-60 239.2 373 37.8
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.3e-54 218.4 368 37.2
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 4.1e-51 207.6 345 36.2
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 2.1e-47 195.3 177 52.0
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 2.6e-45 188.3 566 29.7
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 8.3e-36 156.8 375 28.0
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.1e-35 156.4 382 28.8
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 2.9e-33 148.3 302 37.7
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 3.8e-33 147.9 318 32.1
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 6.5e-33 147.1 302 37.7
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.1e-31 140.6 298 34.2
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 3.7e-28 131.3 271 29.9
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 3.1e-27 128.3 242 30.6
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.6e-26 125.9 91 63.7
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 2.5e-24 118.6 175 51.4
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 9.8e-21 106.7 185 41.6
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 8.0e-15 87.0 127 40.2
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 5.8e-13 80.9 258 27.9
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 9.2e-11 73.6 606 24.9
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.3e-09 68.9 95 41.1
CDE05G3494 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 4.3e-08 64.7 210 27.6


User provided reference genes

Program Settings