Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 2.4e-198 695.3 343 100.0
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 7.1e-150 534.3 395 69.6
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.9e-147 526.2 348 74.1
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 3.6e-146 521.9 347 77.5
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 9.9e-144 513.8 348 73.0
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.3e-143 513.5 350 73.1
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 2.2e-143 512.7 328 76.2
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.2e-143 512.7 350 74.3
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.4e-142 510.0 344 75.6
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 2.4e-142 509.2 349 74.8
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.0e-140 503.8 344 73.3
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 6.2e-138 494.6 339 72.9
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 6.4e-135 484.6 314 75.2
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.1e-133 479.6 348 70.4
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 7.3e-131 471.1 359 68.2
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.3e-130 470.3 342 69.3
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 9.0e-129 464.2 329 69.6
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 9.0e-129 464.2 398 62.6
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 9.0e-129 464.2 398 62.6
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.5e-128 463.4 288 77.8
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 9.9e-128 460.7 347 67.7
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 2.9e-127 459.1 311 71.4
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.8e-127 458.8 397 61.0
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 8.4e-127 457.6 355 67.3
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.9e-126 456.4 340 66.5
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 4.6e-125 451.8 314 68.8
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 1.0e-124 450.7 344 65.4
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.3e-124 449.5 318 66.4
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 5.1e-124 448.4 313 70.3
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 6.7e-124 448.0 318 65.7
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 8.1e-122 441.0 325 65.8
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 8.1e-122 441.0 408 59.1
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.4e-121 440.3 347 66.0
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 4.0e-121 438.7 346 65.3
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 6.9e-121 438.0 349 65.0
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 9.0e-121 437.6 264 77.7
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 1.2e-120 437.2 354 62.4
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.2e-120 437.2 328 65.2
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.2e-120 437.2 373 61.4
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 2.6e-120 436.0 329 64.4
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 3.4e-120 435.6 319 67.7
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 5.8e-120 434.9 311 67.8
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 2.9e-119 432.6 337 64.4
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 2.9e-119 432.6 318 66.0
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 4.9e-119 431.8 349 63.3
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 8.7e-116 421.0 386 59.3
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.6e-114 416.8 276 74.6
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.4e-113 412.9 316 67.1
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.4e-113 412.9 316 67.1
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.2e-112 410.6 328 63.7
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 4.5e-112 408.7 297 66.0
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 2.9e-111 406.0 319 63.3
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 3.2e-110 402.5 343 64.7
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 5.5e-110 401.7 279 68.8
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 6.0e-109 398.3 409 52.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 7.9e-109 397.9 377 54.6
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.8e-108 396.7 309 62.5
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.5e-107 392.9 321 59.5
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 8.2e-106 387.9 352 59.9
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.3e-103 380.6 313 61.3
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.3e-103 380.6 320 61.9
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 6.5e-103 378.3 313 61.0
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 6.5e-103 378.3 315 61.3
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 6.5e-103 378.3 230 80.4
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 2.5e-102 376.3 319 59.2
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 5.5e-102 375.2 279 65.2
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-101 374.0 277 69.3
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 4.6e-101 372.1 314 57.0
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 6.1e-101 371.7 323 57.6
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.0e-100 370.9 298 61.1
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.8e-100 370.2 319 59.6
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 5.1e-100 368.6 239 73.6
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 2.5e-99 366.3 318 58.8
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.3e-98 364.0 312 59.6
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 2.4e-97 359.8 276 62.3
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.1e-97 359.4 301 60.8
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 5.3e-97 358.6 313 58.1
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.6e-96 356.3 310 58.7
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.6e-96 356.3 310 58.7
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 3.4e-96 355.9 235 73.2
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.7e-95 353.6 348 53.7
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.7e-95 353.6 409 49.4
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 2.2e-95 353.2 326 57.1
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.9e-94 350.1 314 55.4
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 4.2e-94 349.0 326 56.1
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 1.2e-93 347.4 227 73.6
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 2.1e-93 346.7 324 55.9
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.9e-93 344.7 305 56.7
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.0e-92 344.4 222 73.4
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 7.4e-91 338.2 225 71.1
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 5.3e-89 332.0 320 52.2
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.2e-88 330.9 238 68.9
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 2.1e-85 320.1 241 64.7
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.0e-83 313.5 273 57.9
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.7e-82 310.5 321 54.8
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 7.0e-81 305.1 355 48.5
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.6e-80 303.9 328 52.7
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 5.9e-80 302.0 225 67.6
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 2.2e-79 300.1 357 44.5
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 2.9e-79 299.7 237 62.4
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 4.7e-77 292.4 312 50.6
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 8.8e-76 288.1 223 62.8
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.4e-75 286.2 234 60.7
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 9.7e-75 284.6 183 77.0
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 8.3e-74 281.6 308 47.4
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 2.4e-73 280.0 346 46.8
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 4.4e-67 259.2 150 78.0
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 9.8e-67 258.1 312 47.8
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 9.8e-67 258.1 325 43.7
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.7e-66 256.1 323 43.3
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 5.0e-63 245.7 159 75.5
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 7.2e-62 241.9 199 60.3
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 5.9e-56 222.2 261 47.9
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 1.3e-55 221.1 182 62.1
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.3e-55 220.3 159 64.8
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.2e-53 214.5 222 53.6
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.8e-53 213.4 144 74.3
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 6.1e-53 212.2 277 42.6
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.5e-46 191.0 173 56.6
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 3.3e-46 189.9 122 71.3
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 5.4e-41 172.6 100 78.0
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.6e-37 161.0 86 88.4
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.2e-35 154.8 101 76.2
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.0e-35 154.1 104 73.1
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 9.2e-33 145.2 177 45.2
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 9.6e-30 135.2 102 66.7
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 3.0e-23 113.6 92 63.0
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.3e-18 98.2 79 58.2
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.1e-14 85.1 102 50.0
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 2.8e-13 80.5 68 66.2
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.6e-13 80.1 68 51.5
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 2.0e-11 74.3 46 80.4
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 2.6e-11 73.9 71 53.5
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 3.4e-11 73.6 63 65.1
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 1.1e-09 68.6 76 55.3
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 1.5e-06 58.2 61 55.7
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 9.6e-06 55.5 43 55.8


User provided reference genes

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