Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G115000 Carya illinoinensis HOM05D003067 ORTHO05D009378 1.5e-169 599.4 291 100.0
Haze_19237 Corylus avellana HOM05D003067 ORTHO05D009378 1.8e-114 416.4 326 64.4
QL02p092630 Quercus lobata HOM05D003067 ORTHO05D009378 1.4e-111 406.8 312 67.3
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 7.2e-111 404.4 287 69.0
FvH4_1g01190 Fragaria vesca HOM05D003067 ORTHO05D009378 2.0e-89 333.2 296 56.4
FAN28G0267 Fragaria x ananassa HOM05D003067 ORTHO05D009378 5.9e-89 331.6 296 55.7
RcHm_v2.0_Chr2g0085991 Rosa chinensis HOM05D003067 ORTHO05D009378 8.5e-88 327.8 296 56.8
Prupe.7G260000 Prunus persica HOM05D003067 ORTHO05D009378 4.2e-87 325.5 296 55.7
Thecc.09G033900 Theobroma cacao HOM05D003067 ORTHO05D009378 1.2e-86 323.9 292 55.1
Dinv41400 Davidia involucrata HOM05D003067 ORTHO05D009378 1.0e-85 320.9 269 57.2
Atru.chr7.146 Acer truncatum HOM05D003067 ORTHO05D009378 4.4e-84 315.5 288 55.9
Hma1.2p1_0028F.1_g017380 Hydrangea macrophylla HOM05D003067 ORTHO05D009378 4.4e-84 315.5 296 54.1
Ciclev10009097m.g Citrus clementina HOM05D003067 ORTHO05D009378 7.5e-84 314.7 300 54.3
TWI34G0508 Tripterygium wilfordii HOM05D003067 ORTHO05D009378 7.5e-84 314.7 299 53.2
CANSAT11G2322 Cannabis sativa HOM05D003067 ORTHO05D009378 3.7e-83 312.4 299 54.2
Gohir.D07G030100 Gossypium hirsutum HOM05D003067 ORTHO05D009378 6.3e-83 311.6 292 53.4
Gohir.A07G026200 Gossypium hirsutum HOM05D003067 ORTHO05D009378 1.1e-82 310.8 292 53.4
Gorai.001G031300 Gossypium raimondii HOM05D003067 ORTHO05D009378 2.0e-81 306.6 293 53.2
Medtr2g450220 Medicago truncatula HOM05D003067 ORTHO05D009378 1.7e-80 303.5 301 51.2
GSVIVG01003733001 Vitis vinifera HOM05D003067 ORTHO05D009378 8.5e-80 301.2 274 55.1
Potri.018G110300 Populus trichocarpa HOM05D003067 ORTHO05D009378 1.4e-77 293.9 300 51.3
Nn2g12305 Nelumbo nucifera HOM05D003067 ORTHO05D009378 1.8e-77 293.5 305 51.5
Eucgr.C00366 Eucalyptus grandis HOM05D003067 ORTHO05D009378 4.4e-76 288.9 301 50.8
Potri.006G187500 Populus trichocarpa HOM05D003067 ORTHO05D009378 1.8e-74 283.5 300 51.0
PGR142G2789 Punica granatum HOM05D003067 ORTHO05D009378 7.7e-73 278.1 307 50.2
Lj6g0006451 Lotus japonicus HOM05D003067 ORTHO05D009378 3.0e-69 266.2 296 49.0
COL.COLO4_18774 Corchorus olitorius HOM05D003067 ORTHO05D009378 1.2e-68 264.2 272 50.7
Aqoxy7G03467 Aquilegia oxysepala HOM05D003067 ORTHO05D009378 5.7e-68 261.9 304 47.4
Actinidia38680 Actinidia chinensis HOM05D003067 ORTHO05D009378 3.7e-67 259.2 258 50.0
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 3.7e-67 259.2 210 60.0
Nitab4.5_0001478g0120 Nicotiana tabacum HOM05D003067 ORTHO05D009378 6.3e-67 258.5 296 47.6
Cc06_g15260 Coffea canephora HOM05D003067 ORTHO05D009378 1.8e-66 256.9 296 48.0
Oeu021253.1 Olea europaea HOM05D003067 ORTHO05D009378 1.8e-66 256.9 291 47.4
ClCG02G017140 Citrullus lanatus HOM05D003067 ORTHO05D009378 7.8e-65 251.5 319 43.3
CsaV3_2G003640 Cucumis sativus L. HOM05D003067 ORTHO05D009378 7.8e-65 251.5 298 44.6
CAN.G551.28 Capsicum annuum HOM05D003067 ORTHO05D009378 2.5e-63 246.5 297 45.5
MELO3C004431.2 Cucumis melo HOM05D003067 ORTHO05D009378 4.3e-63 245.7 324 42.0
Sabra18G0093300 Salix brachista HOM05D003067 ORTHO05D009378 4.7e-62 242.3 372 40.6
CDE06G1077 Ceratophyllum demersum HOM05D003067 ORTHO05D009378 1.5e-60 237.3 298 44.0
Duzib150G0133 Durio zibethinus HOM05D003067 ORTHO05D009378 2.6e-60 236.5 231 49.8
MBI14_g05269_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D009378 1.3e-59 234.2 280 46.1
Peaxi162Scf00108g00714 Petunia axillaris HOM05D003067 ORTHO05D009378 3.7e-59 232.6 303 44.9
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 3.7e-59 232.6 299 45.5
MSTRG.6118 Avicennia marina HOM05D003067 ORTHO05D009378 1.6e-57 227.3 297 41.1
Manes.14G112000 Manihot esculenta HOM05D003067 ORTHO05D009378 6.0e-57 225.3 224 49.6
Thhalv10025917m.g Eutrema salsugineum HOM05D003067 ORTHO05D009378 7.8e-57 224.9 296 42.6
HanXRQChr05g0133261 Helianthus annuus HOM05D003067 ORTHO05D009378 2.3e-56 223.4 295 43.4
ATR1153G020 Amborella trichopoda HOM05D003067 ORTHO05D009378 8.6e-56 221.5 293 42.3
Carub.0007s0954 Capsella rubella HOM05D003067 ORTHO05D009378 8.6e-56 221.5 295 43.7
FAN19G0469 Fragaria x ananassa HOM05D003067 ORTHO05D009378 1.9e-55 220.3 173 61.3
AL7G21080 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 7.3e-55 218.4 299 43.5
BcaNung03423 Brassica carinata HOM05D003067 ORTHO05D009378 7.3e-55 218.4 293 42.7
A01p07190 Brassica napus HOM05D003067 ORTHO05D009378 8.0e-54 214.9 293 41.6
Solyc12g010230.2 Solanum lycopersicum HOM05D003067 ORTHO05D009378 1.8e-53 213.8 267 44.9
Os06g0183700 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D009378 3.1e-53 213.0 306 37.3
C01p07950 Brassica napus HOM05D003067 ORTHO05D009378 1.5e-52 210.7 293 41.0
BolC1t00782H Brassica oleracea HOM05D003067 ORTHO05D009378 1.5e-52 210.7 293 41.0
BraA01t00670Z Brassica rapa HOM05D003067 ORTHO05D009378 2.0e-52 210.3 293 41.3
Sopen12g005120 Solanum pennellii HOM05D003067 ORTHO05D009378 2.0e-52 210.3 264 44.7
BcaC09g51887 Brassica carinata HOM05D003067 ORTHO05D009378 7.5e-52 208.4 293 41.0
Nitab4.5_0002315g0060 Nicotiana tabacum HOM05D003067 ORTHO05D009378 7.5e-52 208.4 294 41.8
HPP92_017493 Vanilla planifolia HOM05D003067 ORTHO05D009378 6.4e-51 205.3 294 40.8
Sp7g28870 Schrenkiella parvula HOM05D003067 ORTHO05D009378 5.4e-50 202.2 297 41.8
Lsat_1_v5_gn_8_59821 Lactuca sativa HOM05D003067 ORTHO05D009378 7.1e-50 201.8 294 40.1
THA.LOC104803568 Tarenaya hassleriana HOM05D003067 ORTHO05D009378 2.5e-47 193.4 297 39.1
Migut.J01329 Erythranthe guttata HOM05D003067 ORTHO05D009378 9.5e-47 191.4 289 37.4
Oeu043497.1 Olea europaea HOM05D003067 ORTHO05D009378 2.1e-46 190.3 289 38.8
AT4G30993 Arabidopsis thaliana HOM05D003067 ORTHO05D009378 4.7e-46 189.1 208 46.6
Oeu043496.1 Olea europaea HOM05D003067 ORTHO05D009378 4.7e-46 189.1 289 38.1
Zm00001eb374750 Zea mays HOM05D003067 ORTHO05D009378 1.4e-45 187.6 296 36.8
SGA_v2.0_scaffold265G46124 Striga asiatica HOM05D003067 ORTHO05D009378 6.8e-45 185.3 280 36.8
Cpa.g.sc46.125 Carica papaya HOM05D003067 ORTHO05D009378 1.7e-43 180.6 202 48.0
CARHR238890 Cardamine hirsuta HOM05D003067 ORTHO05D009378 3.3e-39 166.4 172 48.8
Glyma.15G205500 Glycine max HOM05D003067 ORTHO05D009378 2.1e-38 163.7 232 41.4
MD02G1010100 Malus domestica HOM05D003067 ORTHO05D009378 2.1e-38 163.7 204 44.6
SalBow1G0452 Salvia bowleyana HOM05D003067 ORTHO05D009378 9.9e-36 154.8 295 31.5
DCAR_014819 Daucus carota HOM05D003067 ORTHO05D009378 2.2e-35 153.7 256 34.8
vmacro06093 Vaccinium macrocarpon HOM05D003067 ORTHO05D009378 1.4e-34 151.0 271 37.6
PGSC0003DMG400007894 Solanum tuberosum HOM05D003067 ORTHO05D009378 1.1e-29 134.8 176 43.8
MD02G1010000 Malus domestica HOM05D003067 ORTHO05D009378 1.3e-27 127.9 93 64.5
Nitab4.5_0000525g0300 Nicotiana tabacum HOM05D003067 ORTHO05D009378 7.9e-17 92.0 185 34.1
CSS0014498 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D009378 1.0e-16 91.7 151 35.1
GSVIVG01003739001 Vitis vinifera HOM05D003067 ORTHO05D009378 1.3e-16 91.3 68 64.7
Nitab4.5_0001478g0160 Nicotiana tabacum HOM05D003067 ORTHO05D009378 2.0e-12 77.4 181 30.9
SGA_v2.0_scaffold214G42289 Striga asiatica HOM05D003067 ORTHO05D009378 1.0e-11 75.1 240 24.2
AL2G22600 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 1.3e-11 74.7 113 39.8
Aa31LG2G19330 Aethionema arabicum HOM05D003067 ORTHO05D009378 1.7e-11 74.3 116 37.9
AL6G46700 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 8.4e-11 72.0 108 39.8
SGA_v2.0_scaffold113G31772 Striga asiatica HOM05D003067 ORTHO05D009378 3.9e-08 63.2 159 28.9
Aa31LG2G19340 Aethionema arabicum HOM05D003067 ORTHO05D009378 6.2e-06 55.8 68 45.6
SEGI_40030 Sequoiadendron giganteum HOM05D023718 ORTHO05D009378 8.2e-06 55.5 124 30.6


User provided reference genes

Program Settings