Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.6e-185 652.5 306 100.0
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.5e-175 619.4 305 94.1
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 4.2e-170 601.3 307 90.2
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 4.6e-169 597.8 305 89.2
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 7.9e-169 597.0 307 89.3
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 2.3e-168 595.5 305 89.5
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 3.0e-168 595.1 306 90.8
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 5.1e-168 594.3 305 89.2
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 1.5e-167 592.8 305 89.8
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 1.9e-167 592.4 304 88.5
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 1.9e-167 592.4 304 88.8
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 1.3e-166 589.7 305 87.5
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 1.3e-166 589.7 302 90.7
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 1.7e-166 589.3 305 89.8
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 2.2e-166 589.0 303 89.4
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 4.1e-165 584.7 307 88.6
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.1e-165 584.7 307 88.3
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 4.1e-165 584.7 302 87.7
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 9.1e-165 583.6 303 89.4
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 1.5e-164 582.8 307 88.3
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 3.4e-164 581.6 305 88.5
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 5.9e-164 580.9 307 87.6
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 2.5e-162 575.5 303 85.8
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 7.2e-162 573.9 305 85.9
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 1.2e-161 573.2 299 88.0
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 2.1e-161 572.4 305 86.2
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 2.1e-161 572.4 299 88.0
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 3.6e-161 571.6 305 86.2
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 4.7e-161 571.2 305 85.9
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 4.7e-161 571.2 304 87.2
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 6.1e-161 570.9 305 85.9
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 6.1e-161 570.9 301 86.7
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 6.7e-160 567.4 302 86.8
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 2.0e-159 565.8 305 85.6
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 9.7e-159 563.5 298 86.6
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 2.2e-158 562.4 311 82.3
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 4.8e-158 561.2 299 85.3
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 6.3e-158 560.8 302 85.4
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 8.2e-158 560.5 300 84.3
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.1e-157 560.1 305 85.6
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 1.4e-157 559.7 306 84.6
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 2.4e-157 558.9 297 83.8
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 9.1e-157 557.0 309 82.2
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.0e-156 555.8 305 83.6
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 3.4e-156 555.1 311 81.4
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 1.0e-155 553.5 311 81.0
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 6.5e-155 550.8 295 87.8
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 8.5e-155 550.4 301 82.4
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 2.5e-154 548.9 305 83.3
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 6.1e-153 544.3 301 81.7
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 1.0e-152 543.5 305 83.6
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 6.7e-152 540.8 302 82.8
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 8.8e-152 540.4 305 82.6
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 1.5e-151 539.7 302 82.5
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 1.5e-151 539.7 302 82.5
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 1.5e-151 539.7 302 82.5
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 2.0e-151 539.3 304 82.6
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 2.0e-151 539.3 295 85.4
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 2.6e-151 538.9 297 82.2
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 2.6e-151 538.9 305 83.0
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 7.4e-151 537.3 302 84.4
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 1.3e-150 536.6 302 82.1
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 3.1e-149 531.9 308 79.9
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 9.1e-149 530.4 305 80.7
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 9.1e-149 530.4 305 80.7
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 4.0e-144 515.0 409 65.0
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 8.8e-144 513.8 303 77.6
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 3.3e-143 511.9 275 86.2
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 9.7e-143 510.4 297 81.1
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 4.8e-142 508.1 355 69.9
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 1.8e-141 506.1 271 86.3
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 5.0e-139 498.0 293 80.2
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 6.1e-137 491.1 257 88.3
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 2.5e-130 469.2 264 83.0
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 2.8e-129 465.7 321 68.8
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 8.3e-126 454.1 298 71.5
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 4.1e-125 451.8 305 73.1
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 4.5e-124 448.4 302 71.5
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 2.3e-123 446.0 257 80.9
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 2.0e-119 433.0 298 64.4
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 6.4e-110 401.4 334 60.5
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 1.2e-97 360.5 297 62.3
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 8.1e-97 357.8 274 66.1
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 4.0e-96 355.5 179 91.1
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.6e-95 352.8 186 90.9
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 1.1e-88 330.9 168 89.9
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 5.3e-88 328.6 168 88.7
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 6.9e-88 328.2 168 89.9
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 9.0e-88 327.8 165 89.1
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 1.2e-87 327.4 184 81.0
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 1.5e-87 327.0 168 89.3
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 1.5e-87 327.0 168 91.1
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 1.3e-86 323.9 168 86.3
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 2.2e-86 323.2 170 87.6
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 3.8e-86 322.4 168 89.3
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 8.4e-86 321.2 168 87.5
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 3.2e-85 319.3 168 86.3
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.7e-84 316.2 168 84.5
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 6.0e-84 315.1 165 86.1
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 1.3e-83 313.9 163 87.7
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 2.6e-79 299.7 248 55.2
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 5.4e-77 292.0 185 75.1
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 1.8e-75 287.0 141 91.5
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 1.0e-59 234.6 118 89.0
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 3.0e-59 233.0 118 89.8
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 5.1e-59 232.3 118 86.4
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 5.7e-58 228.8 118 84.7
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 2.2e-57 226.9 118 87.3
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 2.8e-57 226.5 118 86.4
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 3.7e-57 226.1 118 86.4
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 3.7e-57 226.1 122 82.0
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 6.3e-57 225.3 118 88.1
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 1.5e-55 220.7 118 84.7
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 3.4e-55 219.5 118 84.7
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 7.7e-55 218.4 118 83.9
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 2.2e-54 216.9 110 88.2
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.9e-53 213.8 118 81.4
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 3.0e-51 206.5 117 77.8
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 3.3e-50 203.0 138 71.7
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 1.7e-49 200.7 111 79.3
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 3.7e-49 199.5 119 79.0
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 2.4e-48 196.8 101 84.2
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 2.6e-34 150.2 243 38.3
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 1.7e-33 147.5 83 75.9
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 1.3e-30 137.9 77 81.8
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 2.2e-30 137.1 69 91.3
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 1.2e-28 131.3 80 75.0
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 4.8e-25 119.4 66 84.8
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 2.3e-19 100.5 65 73.8
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 9.8e-18 95.1 52 80.8
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 2.5e-13 80.5 41 82.9
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 1.0e-11 75.1 40 82.5
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 1.4e-11 74.7 41 78.0
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 1.4e-11 74.7 34 97.1


User provided reference genes

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