Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.4e-34 149.1 74 100.0
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 2.0e-17 92.0 66 71.2
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 4.5e-17 90.9 66 69.7
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 4.5e-17 90.9 66 69.7
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 5.8e-17 90.5 66 69.7
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 5.8e-17 90.5 66 69.7
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 7.6e-17 90.1 66 69.7
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 9.9e-17 89.7 56 75.0
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 1.7e-16 89.0 74 64.9
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 1.7e-16 89.0 66 68.2
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 1.7e-16 89.0 66 68.2
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 2.2e-16 88.6 66 68.2
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 2.9e-16 88.2 66 68.2
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 3.8e-16 87.8 66 68.2
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 6.4e-16 87.0 66 68.2
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 6.4e-16 87.0 66 68.2
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 6.4e-16 87.0 55 72.7
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 8.4e-16 86.7 56 73.2
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 1.1e-15 86.3 53 77.4
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 1.1e-15 86.3 53 77.4
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 1.1e-15 86.3 56 71.4
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.1e-15 86.3 56 71.4
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.1e-15 86.3 56 71.4
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.1e-15 86.3 56 71.4
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 1.4e-15 85.9 66 66.7
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 1.4e-15 85.9 56 73.2
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 1.4e-15 85.9 56 73.2
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 1.4e-15 85.9 56 73.2
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 1.4e-15 85.9 56 73.2
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 1.9e-15 85.5 62 69.4
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 3.2e-15 84.7 66 66.7
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 4.2e-15 84.3 56 71.4
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 5.4e-15 84.0 66 66.7
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 6.0e-14 80.5 66 60.6
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 6.0e-14 80.5 60 66.7
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 7.9e-14 80.1 66 60.6
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 1.3e-13 79.3 64 62.5
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 1.5e-12 75.9 56 64.3
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 1.9e-12 75.5 56 66.1
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 3.3e-12 74.7 59 64.4
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 5.6e-12 73.9 53 64.2
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 2.1e-11 72.0 102 43.1
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 2.8e-11 71.6 66 56.1
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 8.1e-11 70.1 49 63.3
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 2.4e-10 68.6 66 59.1
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 9.0e-10 66.6 56 58.9
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 2.0e-09 65.5 56 58.9
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 2.2e-08 62.0 56 57.1
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 2.2e-08 62.0 55 54.5
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 2.2e-08 62.0 65 50.8
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 3.8e-08 61.2 66 53.0
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 3.8e-08 61.2 66 56.1
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 3.8e-08 61.2 56 46.4
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 4.9e-08 60.8 66 53.0
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 4.9e-08 60.8 66 53.0
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 4.9e-08 60.8 66 51.5
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 6.5e-08 60.5 66 53.0
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 6.5e-08 60.5 66 53.0
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 6.5e-08 60.5 66 53.0
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 8.4e-08 60.1 62 53.2
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 8.4e-08 60.1 34 76.5
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 1.1e-07 59.7 66 51.5
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 1.1e-07 59.7 66 51.5
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 1.4e-07 59.3 56 55.4
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.4e-07 59.3 66 51.5
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 1.4e-07 59.3 66 51.5
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 1.4e-07 59.3 66 51.5
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 1.4e-07 59.3 66 50.0
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 1.9e-07 58.9 66 50.0
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 1.9e-07 58.9 56 53.6
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 2.5e-07 58.5 55 52.7
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 3.2e-07 58.2 66 51.5
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 4.2e-07 57.8 46 52.2
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 4.2e-07 57.8 66 50.0
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 4.2e-07 57.8 56 51.8
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 4.2e-07 57.8 66 50.0
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 5.5e-07 57.4 66 50.0
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 5.5e-07 57.4 66 50.0
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 5.5e-07 57.4 59 49.2
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 5.5e-07 57.4 56 51.8
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 7.1e-07 57.0 56 51.8
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 7.1e-07 57.0 55 50.9
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 9.3e-07 56.6 66 50.0
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 2.1e-06 55.5 66 48.5
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 2.7e-06 55.1 66 48.5
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 2.7e-06 55.1 66 48.5
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 3.5e-06 54.7 56 51.8
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 3.5e-06 54.7 66 50.0
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 3.5e-06 54.7 66 48.5
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 4.6e-06 54.3 66 47.0
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 4.6e-06 54.3 56 53.6
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 7.9e-06 53.5 79 41.8


User provided reference genes

Program Settings