Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.2e-200 703.0 356 100.0
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.1e-148 530.4 361 76.2
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.7e-146 523.1 361 74.2
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 3.8e-146 521.9 361 74.5
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.1e-137 493.8 329 76.3
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.0e-127 460.7 336 69.0
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.9e-121 439.9 359 64.3
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.9e-121 439.9 339 67.0
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.5e-118 430.3 342 66.4
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.5e-118 430.3 356 65.7
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 3.7e-117 425.6 359 62.7
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 6.3e-117 424.9 339 65.8
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 6.3e-117 424.9 359 62.1
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.4e-116 422.9 358 63.7
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 5.3e-116 421.8 329 66.3
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 3.4e-115 419.1 361 61.5
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 5.9e-115 418.3 360 60.6
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 3.8e-114 415.6 316 67.4
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 8.5e-114 414.5 330 65.2
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 1.4e-113 413.7 364 61.3
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 2.1e-112 409.8 313 66.8
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 2.1e-112 409.8 293 70.3
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 3.6e-112 409.1 313 67.1
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 4.6e-112 408.7 347 62.5
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.0e-111 407.5 348 61.2
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.0e-111 407.5 312 68.6
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 2.3e-111 406.4 312 65.4
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.9e-111 405.6 356 61.8
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 8.8e-111 404.4 340 63.8
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 8.8e-111 404.4 330 63.6
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 8.8e-111 404.4 275 72.0
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.1e-110 404.1 347 62.5
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.1e-110 404.1 370 57.8
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 2.5e-110 402.9 335 62.1
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 3.3e-110 402.5 362 61.0
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 4.3e-110 402.1 335 62.1
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 9.7e-110 401.0 320 65.9
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 9.7e-110 401.0 393 57.5
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.7e-109 400.2 367 60.2
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.7e-109 400.2 278 71.6
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.2e-109 399.8 282 72.3
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 2.2e-109 399.8 360 60.0
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 2.2e-109 399.8 313 65.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 2.8e-109 399.4 270 73.0
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 3.7e-109 399.1 345 60.9
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 8.2e-109 397.9 335 62.4
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.1e-108 397.5 326 61.3
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.1e-108 397.5 268 70.9
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 1.8e-108 396.7 305 65.9
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 5.3e-108 395.2 302 66.9
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.2e-107 394.0 305 64.9
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 2.0e-107 393.3 343 60.6
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.4e-107 392.5 318 64.2
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 3.4e-107 392.5 301 65.4
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 7.7e-107 391.3 293 66.2
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 5.0e-106 388.7 360 59.4
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 6.5e-106 388.3 275 68.4
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.1e-105 387.5 349 60.2
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.9e-105 386.7 353 58.4
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 4.2e-105 385.6 361 57.9
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 5.5e-105 385.2 266 70.3
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 7.2e-105 384.8 259 73.7
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 6.1e-104 381.7 272 68.8
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.0e-103 380.9 256 73.4
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 1.0e-103 380.9 263 73.8
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 3.9e-103 379.0 295 65.1
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 6.7e-103 378.3 272 68.0
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.0e-102 376.7 267 68.9
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 2.0e-102 376.7 262 69.1
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 2.6e-102 376.3 267 68.9
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.7e-101 373.6 274 67.5
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 2.2e-101 373.2 262 68.7
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 4.8e-101 372.1 266 66.9
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.4e-100 369.8 266 71.4
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 3.1e-100 369.4 360 56.9
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 7.0e-100 368.2 438 49.5
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.0e-98 364.4 262 67.6
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.3e-98 364.0 261 69.3
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 3.8e-98 362.5 274 64.6
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 8.5e-98 361.3 275 65.1
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.9e-97 360.1 266 64.7
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.9e-97 360.1 250 72.8
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 3.2e-97 359.4 267 65.2
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 5.5e-97 358.6 267 66.3
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 9.4e-97 357.8 276 64.1
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 9.4e-97 357.8 319 56.4
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.2e-96 357.5 258 66.3
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.1e-96 356.7 261 65.1
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.1e-96 356.7 261 65.1
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 6.1e-96 355.1 213 80.3
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 6.1e-96 355.1 264 65.2
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.0e-95 354.4 260 65.4
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.4e-95 354.0 261 64.4
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.4e-95 354.0 261 64.4
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 2.3e-95 353.2 238 70.6
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 4.0e-95 352.4 260 65.4
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 4.0e-95 352.4 426 48.8
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 6.7e-95 351.7 318 60.4
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.0e-91 340.1 333 52.6
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 5.9e-91 338.6 246 65.4
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.7e-90 337.0 333 52.3
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.2e-89 331.6 267 59.9
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.6e-88 330.5 238 66.8
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.4e-87 327.4 339 56.9
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 8.8e-87 324.7 213 72.3
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 4.8e-85 318.9 301 57.1
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 7.0e-84 315.1 221 71.9
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 2.6e-78 296.6 263 55.9
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 3.4e-78 296.2 356 48.3
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.9e-77 292.4 190 72.1
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 6.1e-72 275.4 243 54.7
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 1.0e-71 274.6 243 56.8
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 2.1e-64 250.4 206 58.7
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 8.3e-61 238.4 225 51.6
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 1.4e-60 237.7 233 53.2
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 5.0e-58 229.2 271 49.1
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.6e-56 224.2 226 54.0
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 2.8e-48 196.8 212 47.6
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 4.0e-47 193.0 122 73.8
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 3.4e-46 189.9 122 74.6
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 5.2e-39 166.0 164 53.7
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.1e-23 115.2 83 65.1
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 2.7e-19 100.5 68 72.1
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.6e-17 92.8 61 70.5
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.6e-17 92.8 61 70.5
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 7.4e-17 92.4 68 64.7
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 6.9e-15 85.9 149 35.6
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 4.5e-14 83.2 145 33.8
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 5.8e-14 82.8 78 57.7
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 3.2e-12 77.0 196 32.1
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 3.2e-12 77.0 182 32.4
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 3.2e-12 77.0 207 30.0
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 5.5e-12 76.3 183 30.1
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 9.3e-12 75.5 116 36.2
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.3e-12 75.5 188 30.3
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 9.3e-12 75.5 116 34.5
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 9.3e-12 75.5 130 36.2
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 9.3e-12 75.5 130 34.6
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.2e-11 75.1 184 31.0
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.6e-11 74.7 203 29.1
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.6e-11 74.7 182 31.3
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 2.7e-11 73.9 116 35.3
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 2.7e-11 73.9 116 35.3
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.7e-11 73.9 116 37.1
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.7e-11 73.9 196 30.6
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 2.7e-11 73.9 191 30.4
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 3.5e-11 73.6 196 31.1
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 3.5e-11 73.6 116 35.3
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 3.5e-11 73.6 124 33.1
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 3.5e-11 73.6 130 33.8
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.5e-11 73.6 190 28.9
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 3.5e-11 73.6 197 28.4
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 3.5e-11 73.6 130 36.2
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 4.6e-11 73.2 130 34.6
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 4.6e-11 73.2 183 29.5
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 4.6e-11 73.2 116 35.3
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 7.9e-11 72.4 184 31.0
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.0e-10 72.0 195 27.7
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 1.0e-10 72.0 147 31.3
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.0e-10 72.0 123 34.1
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.8e-10 71.2 123 34.1
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 3.0e-10 70.5 125 34.4
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 5.1e-10 69.7 183 29.5
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 6.7e-10 69.3 115 31.3
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 8.7e-10 68.9 184 28.3
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 2.5e-09 67.4 121 32.2
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 7.4e-09 65.9 60 51.7
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 7.4e-09 65.9 182 29.1
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 2.1e-08 64.3 196 27.0
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 3.7e-08 63.5 122 31.1
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 6.3e-08 62.8 138 26.8
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.4e-07 61.6 90 35.6
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.4e-07 61.6 92 33.7
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.8e-07 61.2 128 32.0
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 4.1e-07 60.1 188 27.7
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 4.1e-07 60.1 103 33.0
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 6.9e-07 59.3 107 31.8
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 9.0e-07 58.9 123 33.3
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 5.9e-06 56.2 175 28.0


User provided reference genes

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