Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.6e-230 802.4 393 100.0
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 5.7e-188 661.0 390 83.1
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 1.4e-186 656.4 383 83.3
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 5.9e-185 651.0 393 79.9
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 7.7e-185 650.6 383 82.2
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.3e-184 649.8 385 82.3
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 7.3e-183 644.0 390 80.8
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.6e-182 642.9 393 79.9
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.8e-182 642.1 389 80.5
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.8e-181 639.4 379 80.7
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 3.0e-181 638.6 379 80.5
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 4.0e-181 638.3 374 82.6
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 3.4e-180 635.2 390 77.9
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 4.4e-180 634.8 384 78.9
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 1.7e-179 632.9 373 80.4
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 1.7e-179 632.9 376 80.9
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 1.8e-178 629.4 400 76.5
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 2.4e-178 629.0 376 81.4
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 5.4e-178 627.9 375 81.1
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 7.0e-178 627.5 375 79.5
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.0e-177 625.9 372 80.4
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 7.8e-177 624.0 393 76.1
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.0e-176 623.6 377 79.0
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 1.3e-176 623.2 377 79.0
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.9e-176 621.7 390 79.5
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.9e-175 619.4 379 78.4
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 4.3e-175 618.2 389 76.3
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 5.6e-175 617.8 376 77.1
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 7.3e-175 617.5 374 77.3
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 1.2e-174 616.7 378 77.5
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 1.2e-174 616.7 380 78.4
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 2.1e-174 615.9 405 75.1
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.8e-174 615.5 373 80.4
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 4.7e-174 614.8 373 80.4
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 8.0e-174 614.0 369 79.7
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 8.0e-174 614.0 376 79.5
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 1.0e-173 613.6 379 76.5
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 1.4e-173 613.2 376 76.9
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.8e-173 610.9 390 77.9
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 6.8e-173 610.9 376 77.7
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 1.2e-172 610.1 375 78.1
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.5e-172 609.8 382 75.7
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.0e-172 609.4 373 79.4
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 4.9e-171 604.7 372 76.1
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 2.4e-170 602.4 374 79.7
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 1.2e-169 600.1 372 75.5
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 4.6e-169 598.2 371 77.4
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 7.8e-169 597.4 380 77.4
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 2.3e-168 595.9 382 76.4
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 2.3e-168 595.9 374 76.5
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.5e-167 593.2 372 76.9
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 1.5e-167 593.2 436 67.9
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 3.3e-167 592.0 434 68.9
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 1.6e-166 589.7 375 76.8
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 2.1e-166 589.3 373 75.6
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.1e-166 589.3 315 93.3
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 4.7e-166 588.2 373 75.9
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 8.1e-166 587.4 374 76.5
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 1.4e-165 586.6 377 74.5
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.7e-163 579.7 377 74.0
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.7e-163 579.7 372 75.0
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 3.7e-163 578.6 377 73.7
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 6.4e-163 577.8 372 73.7
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 5.4e-162 574.7 383 73.9
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 5.4e-162 574.7 377 73.5
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 7.1e-162 574.3 373 73.5
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 9.2e-162 573.9 399 69.4
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 1.6e-161 573.2 379 73.9
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 2.1e-161 572.8 373 73.5
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 2.1e-161 572.8 373 73.5
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 3.5e-161 572.0 377 72.9
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.7e-160 569.7 371 73.9
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.3e-160 569.3 406 69.2
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.6e-160 567.8 351 79.5
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 1.5e-159 566.6 374 75.9
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.1e-158 562.8 384 71.9
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 3.4e-156 555.4 375 73.3
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 3.4e-156 555.4 374 71.7
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 4.4e-156 555.1 393 71.5
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 2.9e-155 552.4 374 71.1
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 1.1e-154 550.4 377 71.4
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 2.4e-154 549.3 377 71.6
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 9.2e-154 547.4 375 72.0
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 1.0e-152 543.9 373 70.8
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 3.9e-152 542.0 373 70.2
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 6.6e-152 541.2 373 70.2
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 8.6e-152 540.8 374 70.3
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 8.6e-152 540.8 315 84.8
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 9.6e-151 537.3 393 71.0
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.2e-150 537.0 377 68.7
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 3.2e-146 522.3 379 67.3
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 3.5e-145 518.8 376 66.2
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 7.8e-145 517.7 356 69.1
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 7.8e-145 517.7 307 82.7
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 8.7e-144 514.2 393 65.9
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 6.2e-142 508.1 362 70.7
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 5.3e-141 505.0 315 75.2
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 5.8e-140 501.5 399 64.4
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 8.4e-139 497.7 372 66.7
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.4e-138 496.9 356 65.4
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.2e-137 493.8 374 65.2
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 2.7e-137 492.7 379 65.2
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 4.9e-131 471.9 377 60.5
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 7.1e-130 468.0 353 62.3
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 9.3e-130 467.6 275 81.8
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 9.3e-130 467.6 376 62.5
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 5.1e-128 461.8 644 45.5
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 8.7e-128 461.1 291 78.0
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.4e-122 443.7 393 59.5
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 1.9e-122 443.4 372 59.7
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 4.2e-122 442.2 274 79.6
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 4.2e-114 415.6 321 66.7
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 8.7e-112 407.9 378 56.1
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 1.0e-107 394.4 213 88.3
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.4e-104 384.0 397 50.1
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.3e-104 383.3 391 50.6
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 2.3e-104 383.3 557 46.1
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 3.6e-97 359.4 347 51.9
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 1.4e-88 330.9 183 84.2
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 9.5e-74 281.6 155 85.8
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 8.0e-73 278.5 155 85.2
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 8.8e-72 275.0 158 83.5
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 8.8e-72 275.0 158 83.5
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 1.5e-71 274.2 156 84.6
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 4.1e-69 266.2 183 68.9
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 7.0e-69 265.4 162 74.1
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 5.0e-67 259.2 160 79.4
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 4.6e-44 183.0 120 77.5
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 6.0e-44 182.6 120 77.5
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 6.0e-44 182.6 120 77.5
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 4.1e-37 159.8 322 36.3
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.2e-28 131.7 201 44.3
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 2.3e-27 127.5 76 77.6
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 8.7e-27 125.6 320 31.2
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 8.7e-27 125.6 90 61.1
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 6.2e-25 119.4 75 68.0
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 7.1e-21 105.9 334 29.6
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.2e-20 105.1 173 37.6
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 2.1e-20 104.4 69 73.9
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 1.6e-17 94.7 329 28.0
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 6.2e-17 92.8 330 26.7
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.4e-16 90.9 50 88.0
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 1.7e-14 84.7 322 26.1
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.4e-13 80.9 139 35.3
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 2.4e-13 80.9 363 23.7
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 5.5e-13 79.7 322 25.5
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 7.1e-13 79.3 345 24.9
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 1.2e-12 78.6 46 71.7
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 2.1e-12 77.8 196 34.2
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 4.6e-12 76.6 346 24.0
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 4.6e-12 76.6 340 24.7
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 7.9e-12 75.9 354 24.9
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.3e-11 75.1 337 24.9
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 1.8e-11 74.7 358 24.3
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 2.3e-11 74.3 337 24.6
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 2.3e-11 74.3 329 26.1
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 3.0e-11 73.9 331 23.9
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 3.9e-11 73.6 345 25.8
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 8.7e-11 72.4 336 23.8
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 8.7e-11 72.4 325 24.6
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 1.1e-10 72.0 337 24.3
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 2.1e-09 67.8 107 43.0
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 1.4e-08 65.1 45 71.1
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 1.4e-08 65.1 45 71.1
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 1.4e-08 65.1 45 71.1
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.4e-08 65.1 294 24.8
FvH4_5g18020 Fragaria vesca HOM05D005071 ORTHO05D006069 1.7e-06 58.2 28 85.7
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.7e-06 58.2 209 26.8


User provided reference genes

Program Settings