Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G099300 Carya illinoinensis HOM05D006281 ORTHO05D005138 1.3e-114 416.4 214 100.0
CiPaw.16G099400 Carya illinoinensis HOM05D006281 ORTHO05D005138 3.6e-67 258.8 209 68.4
Haze_18961 Corylus avellana HOM05D006281 ORTHO05D005138 1.0e-34 151.0 223 48.0
QL05p066700 Quercus lobata HOM05D006281 ORTHO05D005138 6.4e-24 115.2 196 41.3
Sed0005546 Sechium edule HOM05D006281 ORTHO05D005138 1.1e-23 114.4 217 38.7
Cfa001348 Carpinus fangiana HOM05D006281 ORTHO05D005138 9.2e-23 111.3 267 33.7
RcHm_v2.0_Chr6g0274431 Rosa chinensis HOM05D006281 ORTHO05D005138 9.2e-23 111.3 189 39.7
Gorai.011G284000 Gossypium raimondii HOM05D006281 ORTHO05D005138 3.5e-22 109.4 248 33.9
Manes.10G014600 Manihot esculenta HOM05D006281 ORTHO05D005138 3.5e-22 109.4 244 34.4
Gohir.A10G234000 Gossypium hirsutum HOM05D006281 ORTHO05D005138 1.3e-21 107.5 245 34.3
QL05p072246 Quercus lobata HOM05D021521 ORTHO05D005138 2.3e-21 106.7 139 47.5
QL08p063014 Quercus lobata HOM05D006281 ORTHO05D005138 6.6e-21 105.1 253 30.4
ClCG11G006260 Citrullus lanatus HOM05D006281 ORTHO05D005138 8.6e-21 104.8 244 35.2
CsaV3_6G001730 Cucumis sativus L. HOM05D006281 ORTHO05D005138 1.9e-20 103.6 237 34.2
Ciclev10033546m.g Citrus clementina HOM05D006281 ORTHO05D005138 8.1e-19 98.2 263 31.9
Gohir.D10G246300 Gossypium hirsutum HOM05D006281 ORTHO05D005138 1.1e-18 97.8 239 31.4
QL11p005716 Quercus lobata HOM05D021521 ORTHO05D005138 1.4e-18 97.4 139 46.0
Medtr5g082250 Medicago truncatula HOM05D006281 ORTHO05D005138 3.1e-18 96.3 254 32.7
Lalb_Chr02g0148591 Lupinus albus HOM05D006281 ORTHO05D005138 3.4e-17 92.8 238 33.2
FvH4_7g24210 Fragaria vesca HOM05D006281 ORTHO05D005138 4.4e-17 92.4 244 34.4
TAR633G0389 Trochodendron aralioides HOM05D006281 ORTHO05D005138 1.3e-16 90.9 262 33.6
FAN15G2203 Fragaria x ananassa HOM05D006281 ORTHO05D005138 1.7e-16 90.5 189 38.6
TPR.G19854 Trifolium pratense HOM05D006281 ORTHO05D005138 1.7e-16 90.5 263 32.7
Haze_17206 Corylus avellana HOM05D006281 ORTHO05D005138 3.8e-16 89.4 270 30.7
FAN20G0701 Fragaria x ananassa HOM05D006281 ORTHO05D005138 3.8e-16 89.4 190 37.9
VMungo0647G1369 Vigna mungo HOM05D006949 ORTHO05D008621 1.4e-15 87.4 248 30.2
FAN10G2794 Fragaria x ananassa HOM05D006949 ORTHO05D008621 1.9e-15 87.0 241 33.6
Dinv34408 Davidia involucrata HOM05D006281 ORTHO05D005138 2.4e-15 86.7 296 30.4
FAN03G1065 Fragaria x ananassa HOM05D006281 ORTHO05D005138 2.4e-15 86.7 247 33.2
FAN01G2469 Fragaria x ananassa HOM05D006281 ORTHO05D005138 7.1e-15 85.1 250 32.8
Glyma.10G159300 Glycine max HOM05D006281 ORTHO05D005138 2.7e-14 83.2 161 39.8
Duzib114G0722 Durio zibethinus HOM05D006949 ORTHO05D008621 4.6e-14 82.4 247 28.3
Lj5g0025792 Lotus japonicus HOM05D006281 ORTHO05D005138 6.0e-14 82.0 240 30.0
Sc07g0006300 Simmondsia chinensis HOM05D006281 ORTHO05D005138 1.0e-13 81.3 250 28.8
Glyma.20G229400 Glycine max HOM05D006281 ORTHO05D005138 1.7e-13 80.5 229 31.0
Thecc.10G022800 Theobroma cacao HOM05D006281 ORTHO05D005138 2.3e-13 80.1 292 28.4
FAN06G1003 Fragaria x ananassa HOM05D006281 ORTHO05D005138 3.0e-13 79.7 236 33.5
TAR623G1110 Trochodendron aralioides HOM05D000895 ORTHO05D005138 3.9e-13 79.3 263 28.1
Psat0s288g0040 Pisum sativum HOM05D006281 ORTHO05D005138 5.1e-13 79.0 263 27.4
TPR.G2715 Trifolium pratense HOM05D006281 ORTHO05D005138 6.6e-13 78.6 134 39.6
AUR62043156 Chenopodium quinoa HOM05D006281 ORTHO05D005138 8.6e-13 78.2 245 31.0
Phvul.008G225200 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 8.6e-13 78.2 253 27.3
MELO3C029900.2 Cucumis melo HOM05D006281 ORTHO05D005138 1.9e-12 77.0 271 28.0
Cc02_g06760 Coffea canephora HOM05D006281 ORTHO05D005138 3.3e-12 76.3 179 32.4
Ca_10064_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 4.3e-12 75.9 130 41.5
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea HOM05D006281 ORTHO05D005138 5.6e-12 75.5 272 29.4
Manes.10G014800 Manihot esculenta HOM05D006281 ORTHO05D005138 5.6e-12 75.5 199 33.2
AUR62040493 Chenopodium quinoa HOM05D006281 ORTHO05D005138 7.3e-12 75.1 246 30.1
Nitab4.5_0005628g0020 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.8e-11 73.2 182 31.9
VMungo0720G2983 Vigna mungo HOM05D006281 ORTHO05D005138 4.7e-11 72.4 135 38.5
Atru.chr12.10 Acer truncatum HOM05D006281 ORTHO05D005138 1.1e-10 71.2 229 30.1
CANSAT56G1147 Cannabis sativa HOM05D006281 ORTHO05D005138 1.4e-10 70.9 101 44.6
Ca_05949_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 1.4e-10 70.9 251 27.9
TWI53G0395 Tripterygium wilfordii HOM05D006281 ORTHO05D005138 1.4e-10 70.9 325 25.2
MSTRG.8320 Avicennia marina HOM05D006281 ORTHO05D005138 1.8e-10 70.5 179 35.2
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea HOM05D006281 ORTHO05D005138 4.0e-10 69.3 269 27.9
SalBow3G2112 Salvia bowleyana HOM05D006281 ORTHO05D005138 4.0e-10 69.3 214 29.0
Phvul.007G184700 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 6.9e-10 68.6 235 30.2
GSVIVG01032854001 Vitis vinifera HOM05D043099 ORTHO05D005138 6.9e-10 68.6 234 30.3
CANSAT56G0859 Cannabis sativa HOM05D006281 ORTHO05D005138 8.9e-10 68.2 101 43.6
Nitab4.5_0000802g0100 Nicotiana tabacum HOM05D006281 ORTHO05D005138 8.9e-10 68.2 96 41.7
MD01G1149600 Malus domestica HOM05D006281 ORTHO05D005138 1.2e-09 67.8 292 26.7
Oeu025174.1 Olea europaea HOM05D006281 ORTHO05D005138 1.2e-09 67.8 174 30.5
THA.LOC104824311 Tarenaya hassleriana HOM05D006281 ORTHO05D005138 1.5e-09 67.4 266 28.9
Hund20200 Selenicereus undatus HOM05D006281 ORTHO05D005138 2.0e-09 67.0 56 60.7
ATR0618G177 Amborella trichopoda HOM05D006281 ORTHO05D005138 3.4e-09 66.2 62 51.6
Potri.010G190800 Populus trichocarpa HOM05D006281 ORTHO05D005138 3.4e-09 66.2 74 47.3
MD17G1067400 Malus domestica HOM05D006281 ORTHO05D005138 4.4e-09 65.9 107 43.9
Lalb_Chr10g0105101 Lupinus albus HOM05D006281 ORTHO05D005138 7.6e-09 65.1 145 36.6
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 7.6e-09 65.1 66 51.5
Nn2g11433 Nelumbo nucifera HOM05D006281 ORTHO05D005138 7.6e-09 65.1 67 55.2
COL.COLO4_25627 Corchorus olitorius HOM05D006949 ORTHO05D008621 1.7e-08 63.9 135 36.3
Manes.07G127600 Manihot esculenta HOM05D006281 ORTHO05D005138 1.7e-08 63.9 199 28.1
Actinidia33937 Actinidia chinensis HOM05D006281 ORTHO05D005138 2.2e-08 63.5 222 31.5
Manes.10G015100 Manihot esculenta HOM05D006281 ORTHO05D005138 2.2e-08 63.5 207 30.9
Medtr1g081780 Medicago truncatula HOM05D006281 ORTHO05D005138 2.2e-08 63.5 146 33.6
LjContig00357g0022557 Lotus japonicus HOM05D006281 ORTHO05D005138 2.9e-08 63.2 71 52.1
Peaxi162Scf01313g00025 Petunia axillaris HOM05D006281 ORTHO05D005138 2.9e-08 63.2 284 26.1
Nitab4.5_0005628g0040 Nicotiana tabacum HOM05D006281 ORTHO05D005138 3.8e-08 62.8 80 41.2
vmacro06983 Vaccinium macrocarpon HOM05D006281 ORTHO05D005138 3.8e-08 62.8 54 59.3
Psat6g147880 Pisum sativum HOM05D006281 ORTHO05D005138 4.9e-08 62.4 120 38.3
QL08p006117 Quercus lobata HOM05D021521 ORTHO05D005138 4.9e-08 62.4 164 31.7
Peaxi162Scf01313g00024 Petunia axillaris HOM05D006281 ORTHO05D005138 1.4e-07 60.8 72 44.4
Solyc06g030540.4 Solanum lycopersicum HOM05D006281 ORTHO05D005138 1.4e-07 60.8 73 43.8
CAN.G372.4 Capsicum annuum HOM05D006281 ORTHO05D005138 1.9e-07 60.5 73 43.8
Medtr6g033440 Medicago truncatula HOM05D006281 ORTHO05D005138 1.9e-07 60.5 74 45.9
Glyma.02G255900 Glycine max HOM05D006281 ORTHO05D005138 2.4e-07 60.1 145 31.7
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 4.2e-07 59.3 55 56.4
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 4.2e-07 59.3 55 56.4
Sabra03G0071800 Salix brachista HOM05D063919 ORTHO05D005138 4.2e-07 59.3 86 41.9
Glyma.18G211600 Glycine max HOM05D006281 ORTHO05D005138 5.4e-07 58.9 79 44.3
MBI14_g22157_MAGBIO Magnolia biondii HOM05D006281 ORTHO05D005138 5.4e-07 58.9 57 50.9
SalBow6G7137 Salvia bowleyana HOM05D006281 ORTHO05D005138 5.4e-07 58.9 235 29.8
Sp4g22330 Schrenkiella parvula HOM05D010943 ORTHO05D005138 5.4e-07 58.9 81 45.7
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 7.1e-07 58.5 66 51.5
Medtr1g111700 Medicago truncatula HOM05D006281 ORTHO05D005138 7.1e-07 58.5 66 48.5
Sopen06g008590 Solanum pennellii HOM05D006281 ORTHO05D005138 7.1e-07 58.5 123 35.8
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 9.3e-07 58.2 137 38.0
COL.COLO4_25628 Corchorus olitorius HOM05D006281 ORTHO05D005138 1.2e-06 57.8 66 48.5
Lsat_1_v5_gn_2_121281 Lactuca sativa HOM05D006281 ORTHO05D005138 1.2e-06 57.8 254 26.4
Os09g0114700 Oryza sativa ssp. japonica HOM05D006281 ORTHO05D005138 1.2e-06 57.8 65 43.1
Zm00001eb050100 Zea mays HOM05D006281 ORTHO05D005138 1.2e-06 57.8 169 29.0
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 1.6e-06 57.4 67 47.8
EL10Ac7g16532 Beta vulgaris HOM05D006281 ORTHO05D005138 2.7e-06 56.6 290 25.9
C04p07420 Brassica napus HOM05D001301 ORTHO05D001169 2.7e-06 56.6 66 50.0
QL12p030804 Quercus lobata HOM05D021521 ORTHO05D005138 2.7e-06 56.6 45 62.2
BolC4t22363H Brassica oleracea HOM05D001301 ORTHO05D001169 3.5e-06 56.2 66 50.0
Prupe.2G247900 Prunus persica HOM05D006281 ORTHO05D005138 3.5e-06 56.2 218 29.8
BcaB02g09060 Brassica carinata HOM05D010943 ORTHO05D005138 6.0e-06 55.5 66 48.5
ECA233G1951 Erigeron canadensis HOM05D006281 ORTHO05D005138 6.0e-06 55.5 180 30.6
Glyma.06G220600 Glycine max HOM05D006281 ORTHO05D005138 6.0e-06 55.5 53 54.7
RcHm_v2.0_Chr1g0369781 Rosa chinensis HOM05D006281 ORTHO05D005138 7.8e-06 55.1 139 33.8


User provided reference genes

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