Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 0.0e+00 1739.5 873 100.0
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1285.4 873 77.2
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 0.0e+00 1239.2 873 73.9
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1204.5 873 72.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 0.0e+00 1178.3 873 71.9
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 3.6e-299 1031.6 877 64.2
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 4.8e-296 1021.1 880 63.2
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 2.0e-289 999.2 868 62.1
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 4.4e-289 998.0 865 61.8
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.7e-288 996.1 868 62.0
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.1e-287 991.5 868 61.8
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 1.6e-286 989.6 874 62.8
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 9.5e-284 980.3 879 61.7
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 2.8e-283 978.8 879 61.7
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.8e-283 978.8 879 61.4
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.8e-283 978.8 879 61.7
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 1.0e-282 976.9 879 62.1
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 5.8e-281 971.1 866 62.4
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.2e-278 963.4 879 61.0
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.3e-277 959.9 875 61.7
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 4.4e-273 944.9 866 61.3
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.4e-266 923.3 893 58.1
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 4.0e-266 921.8 875 59.7
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 3.2e-263 912.1 889 57.0
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 2.1e-262 909.4 878 59.3
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 3.0e-261 905.6 888 57.4
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.9e-260 902.9 878 59.5
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 1.5e-257 893.3 876 58.6
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 9.9e-257 890.6 877 58.4
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 2.4e-255 885.9 877 57.9
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.4e-255 884.8 712 65.0
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 3.5e-254 882.1 878 58.5
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 4.6e-254 881.7 880 57.5
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.7e-253 879.8 879 57.8
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.3e-253 879.4 712 64.9
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 2.3e-253 879.4 880 58.1
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 3.9e-253 878.6 885 57.5
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.5e-252 875.9 879 58.0
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 6.2e-251 871.3 877 56.8
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 1.2e-249 867.1 878 56.9
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.9e-248 861.7 885 55.4
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.9e-248 861.7 872 56.1
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 4.9e-248 861.7 880 56.5
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 6.4e-248 861.3 877 56.6
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.5e-246 855.5 747 62.9
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.1e-244 850.5 717 64.4
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.1e-244 850.5 890 54.6
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.1e-244 850.5 886 55.0
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.1e-244 850.5 856 57.1
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.1e-242 844.0 882 56.2
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 9.0e-242 840.9 878 55.7
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 3.8e-240 835.5 874 54.7
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 8.4e-240 834.3 868 55.1
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.9e-239 833.2 878 55.5
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 1.6e-235 820.1 886 53.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 2.8e-235 819.3 889 53.9
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 2.8e-235 819.3 874 56.4
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 8.1e-235 817.8 874 53.0
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 5.3e-234 815.1 886 53.5
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 5.3e-234 815.1 884 53.3
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.5e-233 813.5 880 54.1
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 9.3e-231 804.3 877 53.4
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.3e-229 800.4 877 53.8
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 3.9e-229 798.9 897 51.8
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 5.1e-229 798.5 879 55.2
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 5.1e-229 798.5 894 51.3
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.8e-226 790.0 894 50.6
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.9e-224 782.7 554 72.9
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.4e-223 780.4 795 56.1
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 9.3e-223 777.7 787 57.1
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 4.6e-222 775.4 899 52.6
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 7.9e-222 774.6 889 52.1
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.1e-220 770.8 899 51.5
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 7.4e-220 768.1 887 49.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 2.2e-219 766.5 877 49.9
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.8e-219 765.4 877 50.3
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 6.9e-218 761.5 879 49.8
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 4.5e-217 758.8 879 49.6
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 4.5e-217 758.8 879 49.6
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.7e-216 756.9 881 49.7
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 2.9e-216 756.1 875 49.7
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 4.2e-215 752.3 871 49.5
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 7.9e-214 748.0 884 49.7
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 7.9e-214 748.0 875 49.8
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.4e-213 747.3 881 51.3
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 6.7e-213 745.0 774 55.2
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 2.5e-212 743.0 889 49.6
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 7.4e-212 741.5 875 48.8
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 9.7e-212 741.1 876 49.8
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 2.8e-211 739.6 885 51.1
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 2.8e-211 739.6 869 50.4
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.7e-211 739.2 886 51.1
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 3.4e-209 732.6 874 49.5
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 3.4e-209 732.6 701 58.8
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.3e-208 730.7 878 49.0
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 2.5e-207 726.5 905 49.4
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 3.2e-207 726.1 884 49.5
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 7.2e-207 724.9 918 47.8
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 9.4e-207 724.5 877 48.1
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 9.4e-207 724.5 868 50.0
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.2e-206 724.2 876 48.5
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.1e-206 723.4 877 48.1
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.7e-206 722.2 955 46.6
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 7.9e-206 721.5 881 49.6
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.8e-205 720.3 875 50.9
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 1.8e-205 720.3 886 47.6
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.1e-204 717.6 886 47.7
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.1e-204 717.6 541 68.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.5e-204 717.2 872 47.5
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.4e-204 715.7 872 47.9
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 7.0e-202 708.4 878 47.4
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 2.0e-201 706.8 684 58.8
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 9.4e-199 698.0 912 46.4
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 1.0e-197 694.5 879 49.0
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 2.0e-196 690.3 865 49.1
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 4.4e-196 689.1 866 47.5
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.0e-193 680.2 444 75.9
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 1.6e-182 644.0 890 45.3
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 8.0e-182 641.7 901 44.4
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 6.1e-174 615.5 652 54.3
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.0e-172 610.5 896 44.3
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 7.5e-172 608.6 648 55.1
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 2.3e-160 570.5 937 41.4
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 1.5e-156 557.8 667 51.1
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 7.1e-154 548.9 645 51.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 4.0e-141 506.5 881 39.7
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.6e-134 483.4 441 58.5
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.7e-128 464.5 696 41.7
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.9e-127 461.1 729 39.2
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 9.6e-127 458.8 268 85.1
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 9.6e-127 458.8 268 85.1
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.1e-113 414.5 569 45.2
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.7e-113 414.1 569 45.2
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.1e-101 375.6 328 57.3
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.5e-95 354.4 206 85.4
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 4.1e-85 320.5 398 49.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 9.7e-79 299.3 467 43.3
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 8.8e-64 249.6 221 57.0
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 5.9e-52 210.3 142 74.6
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 6.8e-40 170.2 157 59.9
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 2.0e-39 168.7 149 58.4
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 2.1e-36 158.7 91 84.6
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 5.6e-34 150.6 159 56.6
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 2.1e-33 148.7 94 75.5
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 7.1e-29 133.7 494 28.9
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.1e-21 109.8 384 28.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 2.7e-20 105.1 67 71.6
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.0e-19 103.2 390 27.9
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.2e-12 79.7 529 24.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 5.1e-11 74.3 229 30.1
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 6.9e-08 63.9 180 26.7
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 2.6e-07 62.0 51 49.0
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 2.2e-06 58.9 151 32.5
AagrBONN_evm.TU.Sc2ySwM_344.3602 Anthoceros agrestis HOM05D027721 ORTHO05D031191 6.4e-06 57.4 111 33.3


User provided reference genes

Program Settings