Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 2.1e-136 490.0 477 100.0
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 2.6e-94 350.1 477 71.5
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 3.1e-87 326.6 473 73.8
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 2.2e-69 267.3 478 74.1
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 6.5e-69 265.8 474 60.3
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 3.0e-66 256.9 475 56.8
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 2.0e-65 254.2 470 74.5
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 5.7e-65 252.7 474 67.9
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 6.3e-64 249.2 476 72.9
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 4.1e-63 246.5 477 69.0
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 7.0e-63 245.7 477 63.7
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 1.7e-61 241.1 474 66.7
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 2.9e-61 240.4 479 64.3
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 3.8e-61 240.0 480 67.7
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 8.5e-61 238.8 478 62.6
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 1.1e-60 238.4 473 67.2
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 4.2e-60 236.5 478 66.7
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 7.2e-60 235.7 473 66.6
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 6.1e-59 232.6 477 63.9
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.0e-58 230.3 470 65.7
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 1.2e-57 228.4 471 65.4
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 2.0e-57 227.6 477 62.5
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 2.6e-57 227.3 470 66.2
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 4.4e-57 226.5 479 56.8
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.8e-56 223.8 470 63.4
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 5.4e-55 219.5 450 64.2
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 9.1e-55 218.8 477 61.4
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 9.1e-55 218.8 478 61.1
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.2e-54 218.4 475 63.2
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.9e-53 213.8 479 62.6
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 8.6e-53 212.2 479 62.6
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 2.1e-51 207.6 460 57.0
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 4.7e-51 206.5 446 58.5
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 6.1e-51 206.1 472 56.4
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 6.1e-51 206.1 472 56.4
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 6.1e-51 206.1 472 56.4
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 8.0e-51 205.7 472 58.9
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 1.0e-50 205.3 460 58.7
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 1.8e-50 204.5 474 49.2
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 3.0e-50 203.8 472 54.9
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 4.0e-50 203.4 461 65.9
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.7e-48 198.0 479 53.0
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 2.2e-48 197.6 477 66.5
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 8.3e-48 195.7 456 53.5
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 3.1e-47 193.7 480 65.4
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 3.1e-47 193.7 166 60.8
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 5.4e-47 193.0 476 55.3
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 9.2e-47 192.2 437 62.2
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 9.2e-47 192.2 476 62.4
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 2.0e-46 191.0 420 75.2
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 2.0e-46 191.0 453 46.6
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 7.8e-46 189.1 134 67.2
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 1.7e-45 188.0 460 45.2
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 2.9e-45 187.2 450 43.1
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 2.9e-45 187.2 477 65.6
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 6.6e-45 186.0 450 43.1
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 6.6e-45 186.0 471 42.0
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.1e-44 185.3 465 41.9
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 1.1e-44 185.3 477 41.9
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 1.5e-44 184.9 167 56.9
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 1.5e-44 184.9 463 46.7
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 1.2e-43 181.8 465 59.4
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 2.8e-43 180.6 463 47.5
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 6.1e-43 179.5 471 42.7
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 1.0e-42 178.7 433 56.8
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 1.4e-42 178.3 465 41.3
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 3.0e-42 177.2 476 53.8
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 5.7e-41 172.9 455 46.2
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 5.7e-41 172.9 479 39.7
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 7.5e-41 172.6 463 59.6
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.7e-40 171.4 463 49.7
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 2.9e-40 170.6 462 44.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.7e-40 170.2 353 76.8
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 1.1e-39 168.7 463 46.9
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 2.4e-39 167.5 476 45.2
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 2.4e-39 167.5 458 51.7
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 5.4e-39 166.4 472 46.6
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 6.6e-37 159.5 155 49.0
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 1.5e-36 158.3 475 43.4
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 1.2e-35 155.2 443 58.2
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 1.6e-35 154.8 479 48.4
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 3.6e-35 153.7 464 46.6
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.6e-35 153.7 431 60.6
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 1.5e-33 148.3 452 65.7
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 2.0e-33 147.9 398 32.7
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 5.8e-33 146.4 379 69.1
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 5.8e-33 146.4 169 45.6
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 5.8e-33 146.4 479 49.1
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 7.5e-33 146.0 104 71.2
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 2.9e-32 144.1 398 61.6
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 6.4e-32 142.9 482 53.3
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 1.1e-31 142.1 156 44.9
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 1.1e-31 142.1 146 45.9
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 6.0e-30 136.3 381 73.2
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 6.0e-30 136.3 428 56.3
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 3.0e-29 134.0 353 68.6
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 3.0e-29 134.0 376 71.3
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 1.1e-28 132.1 394 52.8
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 4.3e-28 130.2 104 64.4
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 4.7e-27 126.7 129 45.0
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.6e-25 120.9 100 61.0
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 3.7e-24 117.1 102 56.9
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 3.5e-22 110.5 99 54.5
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.9e-20 104.8 84 58.3
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 4.3e-20 103.6 151 35.8
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 4.3e-20 103.6 135 36.3
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 5.6e-20 103.2 84 59.5
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 7.3e-20 102.8 84 63.1
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 6.2e-19 99.8 100 49.0
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 5.2e-18 96.7 99 44.4
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 8.9e-18 95.9 105 41.0
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 5.8e-17 93.2 88 44.3
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 2.2e-16 91.3 411 37.5
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 4.9e-16 90.1 95 45.3
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 2.4e-15 87.8 89 51.7
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 1.0e-13 82.4 69 55.1
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 1.1e-12 79.0 71 54.9
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.6e-11 75.1 52 67.3
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 6.2e-11 73.2 80 48.8
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 4.4e-09 67.0 94 39.4
ATR0787G037 Amborella trichopoda HOM05D006400 ORTHO05D008039 7.6e-09 66.2 68 47.1
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 7.6e-09 66.2 143 27.3
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 7.6e-09 66.2 102 36.3
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 1.3e-08 65.5 104 32.7
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 6.4e-08 63.2 102 35.3
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 8.4e-08 62.8 112 29.5
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.4e-07 62.0 139 30.2
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 1.4e-07 62.0 118 27.1
Peaxi162Scf00675g00062 Petunia axillaris HOM05D006596 ORTHO05D008497 2.4e-07 61.2 116 30.2
Manes.10G054800 Manihot esculenta HOM05D000424 ORTHO05D000355 5.4e-07 60.1 122 29.5
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 5.4e-07 60.1 91 38.5
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 5.4e-07 60.1 123 27.6
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 9.3e-07 59.3 106 31.1
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 9.3e-07 59.3 116 30.2
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 9.3e-07 59.3 116 30.2
Nitab4.5_0009788g0010 Nicotiana tabacum HOM05D006596 ORTHO05D008497 1.2e-06 58.9 116 31.0
CANSAT35G0249 Cannabis sativa HOM05D000424 ORTHO05D000355 2.7e-06 57.8 117 30.8
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 2.7e-06 57.8 139 27.3
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 3.5e-06 57.4 139 28.1
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 3.5e-06 57.4 139 26.6
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 3.5e-06 57.4 139 26.6
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 3.5e-06 57.4 116 25.9
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 3.5e-06 57.4 103 32.0
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 3.5e-06 57.4 116 29.3
Cfa006779 Carpinus fangiana HOM05D000424 ORTHO05D000355 4.6e-06 57.0 139 28.1
Nn2g14733 Nelumbo nucifera HOM05D000424 ORTHO05D000355 4.6e-06 57.0 139 27.3
SEGI_13595 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 4.6e-06 57.0 122 27.9
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 6.0e-06 56.6 116 25.9
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 6.0e-06 56.6 139 28.1
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 7.8e-06 56.2 139 26.6
Solyc01g007267.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 7.8e-06 56.2 139 26.6
Sopen01g003270 Solanum pennellii HOM05D000424 ORTHO05D000355 7.8e-06 56.2 139 26.6
PGSC0003DMG400034554 Solanum tuberosum HOM05D000424 ORTHO05D000355 7.8e-06 56.2 139 26.6


User provided reference genes

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