Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 5.5e-27 123.6 65 100.0
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 8.1e-23 109.8 60 91.7
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 2.4e-22 108.2 63 85.7
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 6.5e-20 100.1 62 82.3
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 3.2e-19 97.8 62 77.4
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 9.3e-19 96.3 62 77.4
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.6e-18 95.5 62 75.8
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 2.7e-18 94.7 59 84.7
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 3.5e-18 94.4 59 83.1
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 6.0e-18 93.6 58 79.3
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.3e-17 91.7 58 75.9
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 2.3e-17 91.7 58 75.9
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 3.0e-17 91.3 58 77.6
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 3.0e-17 91.3 63 73.0
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 3.9e-17 90.9 62 71.0
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 3.9e-17 90.9 65 67.7
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 3.9e-17 90.9 65 67.7
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 5.1e-17 90.5 58 74.1
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 6.7e-17 90.1 61 70.5
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 8.7e-17 89.7 61 73.8
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 8.7e-17 89.7 60 75.0
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 8.7e-17 89.7 58 74.1
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 1.9e-16 88.6 58 75.9
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 2.5e-16 88.2 63 69.8
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 2.5e-16 88.2 63 71.4
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 3.3e-16 87.8 65 67.7
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 9.6e-16 86.3 65 67.7
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 9.6e-16 86.3 60 73.3
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 9.6e-16 86.3 60 71.7
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 1.6e-15 85.5 58 67.2
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.6e-15 85.5 59 72.9
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 2.1e-15 85.1 52 76.9
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 2.1e-15 85.1 59 71.2
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 2.8e-15 84.7 59 71.2
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 2.8e-15 84.7 55 80.0
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 3.7e-15 84.3 63 71.4
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 4.8e-15 84.0 63 68.3
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 1.4e-14 82.4 52 76.9
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 3.1e-14 81.3 55 69.1
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 5.3e-14 80.5 52 75.0
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 9.0e-14 79.7 63 66.7
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 9.0e-14 79.7 63 66.7
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 1.2e-13 79.3 60 70.0
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.2e-13 79.3 63 68.3
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.2e-13 79.3 63 68.3
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 2.0e-13 78.6 50 74.0
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 2.0e-13 78.6 50 74.0
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 2.6e-13 78.2 61 62.3
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.6e-13 78.2 63 66.7
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 3.4e-13 77.8 59 64.4
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 4.5e-13 77.4 61 62.3
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 7.6e-13 76.6 49 75.5
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 1.0e-12 76.3 56 69.6
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 1.3e-12 75.9 52 67.3
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 1.3e-12 75.9 52 67.3
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 2.2e-12 75.1 59 62.7
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 2.2e-12 75.1 59 62.7
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 2.2e-12 75.1 58 62.1
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 2.2e-12 75.1 59 62.7
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 2.2e-12 75.1 61 62.3
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 3.8e-12 74.3 59 61.0
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 5.0e-12 73.9 59 61.0
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 5.0e-12 73.9 59 61.0
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 5.0e-12 73.9 59 61.0
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 6.5e-12 73.6 64 59.4
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 1.1e-11 72.8 59 59.3
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 1.1e-11 72.8 58 58.6
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 1.1e-11 72.8 58 58.6
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 1.4e-11 72.4 59 57.6
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.9e-11 72.0 56 64.3
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 1.9e-11 72.0 59 61.0
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 1.9e-11 72.0 65 56.9
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 2.5e-11 71.6 59 57.6
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 5.5e-11 70.5 59 61.0
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 7.2e-11 70.1 52 61.5
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 1.2e-10 69.3 59 59.3
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 1.2e-10 69.3 55 58.2
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 4.6e-10 67.4 59 55.9
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 6.1e-10 67.0 62 54.8
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 1.3e-09 65.9 52 65.4
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 3.0e-09 64.7 55 54.5
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 3.9e-09 64.3 57 54.4
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 3.3e-08 61.2 39 69.2
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 7.4e-08 60.1 78 43.6
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 8.2e-07 56.6 32 71.9
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 3.1e-06 54.7 45 57.8
Nn4g23752 Nelumbo nucifera HOM05D007389 ORTHO05D009400 3.1e-06 54.7 32 78.1


User provided reference genes

Program Settings