Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.1e-50 202.2 112 100.0
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 5.5e-19 97.8 120 60.8
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.0e-17 92.0 108 48.1
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 1.2e-16 90.1 115 49.6
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.5e-16 89.7 107 56.1
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.3e-15 86.7 109 55.0
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 4.8e-15 84.7 116 45.7
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 6.3e-15 84.3 116 50.9
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 6.3e-15 84.3 118 50.0
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.4e-14 83.2 113 47.8
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-14 83.2 107 46.7
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.8e-14 82.8 107 47.7
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.4e-14 82.4 107 46.7
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 4.1e-14 81.6 66 66.7
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 2.7e-13 79.0 108 50.9
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.5e-13 78.6 114 51.8
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 3.5e-13 78.6 117 43.6
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 7.7e-13 77.4 116 50.0
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.7e-12 76.3 128 46.9
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.9e-12 75.5 111 49.5
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 2.9e-12 75.5 113 46.9
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 3.8e-12 75.1 117 43.6
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.5e-12 74.3 111 50.5
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 6.5e-12 74.3 111 49.5
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 6.5e-12 74.3 122 47.5
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.1e-11 73.6 112 49.1
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.5e-11 73.2 119 43.7
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.5e-11 73.2 124 43.5
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.9e-11 72.8 128 43.8
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 1.9e-11 72.8 116 41.4
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 2.5e-11 72.4 116 45.7
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 3.2e-11 72.0 123 44.7
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 3.2e-11 72.0 116 43.1
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 4.2e-11 71.6 120 53.3
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 9.4e-11 70.5 117 42.7
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 9.4e-11 70.5 116 44.8
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.2e-10 70.1 74 52.7
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.2e-10 70.1 104 42.3
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.6e-10 69.7 116 40.5
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.1e-10 69.3 122 41.0
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 2.1e-10 69.3 115 40.9
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.6e-10 68.6 115 41.7
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 3.6e-10 68.6 98 54.1
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 3.6e-10 68.6 116 46.6
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.6e-10 68.6 118 43.2
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 3.6e-10 68.6 117 44.4
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 4.7e-10 68.2 125 42.4
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 4.7e-10 68.2 129 43.4
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 8.0e-10 67.4 117 44.4
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 8.0e-10 67.4 134 42.5
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.0e-09 67.0 116 39.7
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.4e-09 66.6 118 49.2
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.4e-09 66.6 120 39.2
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 1.4e-09 66.6 113 45.1
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.8e-09 66.2 112 41.1
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.8e-09 66.2 115 40.9
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.8e-09 66.2 124 38.7
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 2.3e-09 65.9 118 50.8
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 4.0e-09 65.1 106 41.5
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 5.2e-09 64.7 121 39.7
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 6.8e-09 64.3 118 41.5
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 6.8e-09 64.3 113 39.8
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 8.8e-09 63.9 119 45.4
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.2e-08 63.5 135 38.5
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.2e-08 63.5 120 40.8
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 1.2e-08 63.5 113 47.8
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.5e-08 63.2 67 52.2
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.5e-08 63.2 101 42.6
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.0e-08 62.8 126 38.1
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.0e-08 62.8 101 42.6
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 2.0e-08 62.8 118 44.9
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 2.0e-08 62.8 113 46.9
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 2.6e-08 62.4 64 53.1
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 2.6e-08 62.4 84 54.8
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 3.4e-08 62.0 116 46.6
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 4.4e-08 61.6 79 48.1
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.7e-08 61.2 126 38.9
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 5.7e-08 61.2 112 47.3
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 5.7e-08 61.2 106 49.1
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 1.3e-07 60.1 70 48.6
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.3e-07 60.1 105 38.1
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 1.3e-07 60.1 98 43.9
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.7e-07 59.7 129 41.1
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 1.7e-07 59.7 113 44.2
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 2.2e-07 59.3 111 36.9
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.8e-07 58.9 121 38.8
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.8e-07 58.9 113 45.1
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 3.7e-07 58.5 118 41.5
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.7e-07 58.5 118 41.5
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 4.8e-07 58.2 111 39.6
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.8e-07 58.2 121 38.0
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.3e-07 57.8 126 38.1
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 6.3e-07 57.8 114 37.7
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 8.3e-07 57.4 127 32.3
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 8.3e-07 57.4 102 45.1
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 8.3e-07 57.4 70 47.1
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 1.1e-06 57.0 37 70.3
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.1e-06 57.0 92 42.4
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 1.1e-06 57.0 109 42.2
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.8e-06 56.2 115 39.1
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 1.8e-06 56.2 105 41.0
PSO017G0024 Papaver somniferum HOM05D005816 ORTHO05D006915 1.8e-06 56.2 25 96.0
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.1e-06 55.5 109 41.3
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 4.1e-06 55.1 64 46.9
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 5.4e-06 54.7 111 38.7
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 5.4e-06 54.7 37 64.9
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 7.0e-06 54.3 124 35.5
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 7.0e-06 54.3 116 37.9
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 7.0e-06 54.3 115 35.7
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.0e-06 54.3 118 38.1
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 7.0e-06 54.3 69 47.8
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 9.1e-06 53.9 36 69.4


User provided reference genes

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