Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1894.4 927 100.0
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1685.2 926 89.6
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1580.5 921 86.0
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 0.0e+00 1334.7 946 71.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 0.0e+00 1295.8 925 71.9
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 0.0e+00 1167.5 929 64.8
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1167.1 738 80.6
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 0.0e+00 1159.1 933 64.7
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 0.0e+00 1117.8 907 64.3
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 0.0e+00 1089.3 926 61.6
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 2.2e-299 1032.3 933 58.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 3.2e-298 1028.5 918 58.3
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.0e-291 1004.6 920 56.7
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 1.1e-290 1003.4 920 56.6
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.4e-288 996.5 920 56.6
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 4.4e-287 991.5 919 56.3
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.7e-286 989.6 929 55.8
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.9e-284 981.1 931 56.3
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 5.2e-280 968.0 930 55.7
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 5.4e-277 958.0 930 55.2
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.8e-269 932.9 924 53.5
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 2.0e-268 929.5 924 52.8
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 4.7e-265 918.3 898 55.8
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.2e-263 913.7 919 53.3
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 3.3e-258 895.6 920 52.7
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 4.7e-257 891.7 914 52.8
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 2.3e-256 889.4 920 52.7
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 3.7e-254 882.1 930 51.0
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.4e-253 879.4 934 52.2
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 5.4e-253 878.2 929 51.1
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 1.0e-251 874.0 934 51.2
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 6.6e-251 871.3 927 51.8
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.3e-250 869.0 731 60.7
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 3.2e-245 852.4 935 50.5
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 7.8e-244 847.8 931 50.1
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 4.3e-242 842.0 916 50.7
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.6e-241 840.1 911 52.1
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.1e-240 837.4 914 50.8
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.1e-237 827.4 931 49.9
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.9e-237 826.6 929 49.8
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 6.0e-236 821.6 926 49.0
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 8.6e-235 817.8 952 48.4
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 8.1e-233 811.2 832 52.6
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.9e-227 792.3 926 49.9
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 5.1e-227 792.0 927 49.4
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.5e-226 790.4 930 48.2
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.9e-221 773.5 779 52.5
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 6.6e-219 765.0 945 46.6
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 2.0e-215 753.4 920 47.5
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.2e-212 744.2 816 49.5
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.1e-210 737.6 895 46.7
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.3e-203 714.1 779 50.4
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.1e-202 711.1 887 43.7
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.1e-196 690.3 936 42.6
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 4.6e-196 689.1 936 42.0
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.8e-195 687.2 934 45.1
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.1e-192 677.9 938 41.8
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 7.4e-186 655.2 895 42.7
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 1.3e-185 654.4 925 42.1
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.4e-184 650.2 923 41.8
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 7.7e-183 645.2 891 43.2
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.3e-182 644.4 919 40.4
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.9e-181 640.6 906 42.4
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.1e-180 637.1 936 41.2
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 3.9e-179 632.9 880 45.0
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 8.8e-179 631.7 965 40.7
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.3e-178 629.8 949 37.8
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 3.7e-177 626.3 903 42.0
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.0e-175 620.5 940 39.0
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 1.0e-174 618.2 898 42.3
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 5.0e-174 615.9 903 42.4
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 4.2e-173 612.8 954 40.0
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 1.6e-172 610.9 904 41.0
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.6e-170 603.6 899 41.4
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.4e-170 602.8 931 40.0
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 2.4e-168 597.0 953 39.6
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.2e-164 584.7 935 38.4
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.4e-163 581.3 945 40.3
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 3.0e-163 580.1 915 41.1
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 4.0e-163 579.7 909 41.3
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 4.4e-162 576.2 929 39.7
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 5.7e-162 575.9 909 41.7
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.7e-161 574.3 811 44.0
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 2.8e-161 573.5 913 40.9
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.8e-160 570.9 954 39.8
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 1.9e-157 560.8 937 39.5
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 1.6e-156 557.8 954 39.0
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.4e-152 544.7 970 37.7
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.3e-150 537.3 934 37.4
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 4.7e-148 529.6 910 39.1
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.0e-147 528.5 775 40.6
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.8e-139 501.1 833 38.4
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 2.9e-137 493.8 926 36.2
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 8.3e-137 492.3 941 36.2
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.1e-136 491.9 670 43.6
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 2.3e-131 474.2 578 45.2
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 4.7e-124 449.9 415 56.6
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 2.3e-123 447.6 921 34.2
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 4.7e-116 423.3 409 51.6
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 3.1e-107 394.0 971 32.0
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 2.6e-106 391.0 542 43.9
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.6e-103 381.7 540 42.0
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.4e-99 367.9 968 30.8
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.7e-95 354.4 667 35.5
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 8.7e-94 349.4 960 30.8
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.5e-93 347.8 483 40.2
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.4e-88 332.0 958 30.4
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 2.5e-85 321.2 524 37.2
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 1.1e-80 305.8 517 37.7
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 8.8e-78 296.2 955 28.7
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 8.5e-73 279.6 353 43.3
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.9e-72 278.5 640 32.0
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.7e-70 270.0 777 30.5
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 2.1e-63 248.4 368 41.0
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.6e-61 241.5 454 36.3
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 3.3e-61 241.1 201 59.2
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 3.7e-60 237.7 181 66.9
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.8e-60 237.3 302 47.4
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 5.3e-59 233.8 289 47.8
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.5e-53 213.4 451 33.5
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.8e-51 208.8 402 34.6
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.1e-51 207.6 699 26.3
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.2e-50 206.1 402 34.1
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.6e-50 205.7 442 32.1
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 5.5e-48 197.2 328 36.9
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 8.0e-47 193.4 488 32.2
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.7e-44 185.7 250 44.8
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.8e-35 155.6 213 39.4
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.4e-35 155.2 526 27.6
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 8.6e-33 146.7 327 30.6
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 8.6e-33 146.7 327 30.6
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.8e-30 139.0 114 55.3
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.0e-25 123.2 595 24.4
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 3.0e-25 121.7 690 23.6
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-24 119.8 381 29.1
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.3e-24 117.1 425 27.8
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 1.4e-22 112.8 138 44.2
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.8e-21 106.7 215 34.0
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 2.1e-18 99.0 200 39.0
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.3e-17 96.3 534 24.5
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 2.3e-17 95.5 529 24.2
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 5.0e-17 94.4 738 21.3
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 1.1e-14 86.7 118 43.2
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.2e-14 84.3 416 22.4
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 3.4e-13 81.6 149 35.6
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 3.7e-12 78.2 149 34.9
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 1.9e-11 75.9 173 33.5
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.3e-09 69.7 144 34.7
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 1.3e-09 69.7 141 34.8
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.5e-08 65.5 250 28.8
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 4.3e-08 64.7 123 32.5
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.6e-08 64.3 182 29.7
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.0e-06 58.2 254 26.4
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 6.8e-06 57.4 57 47.4


User provided reference genes

Program Settings