Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 2.8e-180 635.2 329 100.0
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 2.7e-98 362.8 280 70.0
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 1.2e-93 347.4 326 60.4
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 4.3e-88 328.9 417 51.1
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 3.1e-86 322.8 351 54.7
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 9.7e-80 301.2 341 55.4
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 3.7e-79 299.3 345 53.3
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 6.9e-78 295.0 358 50.8
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 2.9e-76 289.7 354 52.3
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 3.6e-74 282.7 332 52.7
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 1.9e-72 276.9 384 47.4
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 2.5e-72 276.6 368 47.0
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 9.7e-72 274.6 332 50.3
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 2.4e-70 270.0 345 47.5
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 1.5e-69 267.3 338 50.3
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 4.5e-69 265.8 390 45.4
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 3.2e-67 259.6 356 47.5
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 7.2e-67 258.5 341 49.0
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 1.2e-66 257.7 341 49.0
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 2.1e-66 256.9 348 46.0
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 1.0e-65 254.6 296 49.7
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.4e-65 254.2 330 46.7
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 1.4e-65 254.2 340 48.2
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 3.9e-65 252.7 337 50.7
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 2.6e-64 250.0 341 50.1
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 4.4e-64 249.2 329 48.3
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 1.7e-63 247.3 337 48.4
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 5.3e-62 242.3 331 47.1
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 2.0e-61 240.4 342 46.8
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 2.6e-61 240.0 340 47.1
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 1.0e-60 238.0 306 47.1
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 1.7e-60 237.3 341 45.5
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 2.2e-60 236.9 338 45.6
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 2.5e-59 233.4 341 44.9
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 3.2e-59 233.0 361 43.5
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 3.6e-58 229.6 362 44.2
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 3.6e-58 229.6 321 43.9
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 4.7e-58 229.2 332 44.0
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 8.0e-58 228.4 348 45.1
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 8.0e-58 228.4 347 45.0
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 4.4e-56 222.6 331 44.7
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 1.3e-55 221.1 331 44.1
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 1.3e-55 221.1 295 48.8
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 2.4e-54 216.9 331 44.1
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 2.4e-54 216.9 265 48.7
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 5.9e-53 212.2 332 41.0
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 5.9e-53 212.2 330 41.8
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 2.9e-52 209.9 173 61.8
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 5.0e-52 209.1 345 42.6
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 6.5e-52 208.8 329 41.6
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 6.5e-52 208.8 331 43.2
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 7.2e-51 205.3 314 43.0
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 1.6e-50 204.1 364 39.0
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 2.7e-50 203.4 335 41.8
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 4.7e-50 202.6 320 43.1
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 8.0e-50 201.8 256 47.7
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 8.0e-50 201.8 331 41.7
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 6.7e-49 198.7 363 37.7
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 6.7e-49 198.7 344 41.6
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 6.7e-49 198.7 287 45.6
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 3.7e-47 193.0 341 41.9
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 6.3e-47 192.2 326 39.6
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 3.1e-46 189.9 267 44.6
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 1.6e-45 187.6 136 64.0
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 1.6e-45 187.6 337 41.8
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 7.7e-45 185.3 265 43.0
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 8.5e-44 181.8 268 42.2
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 1.5e-43 181.0 274 42.3
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 5.5e-43 179.1 356 37.9
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 7.2e-43 178.7 268 43.7
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 9.4e-43 178.3 343 39.7
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 1.2e-42 177.9 282 42.6
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 1.2e-42 177.9 282 42.6
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 2.1e-42 177.2 259 42.1
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 1.8e-41 174.1 421 34.7
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 6.8e-41 172.2 268 41.4
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 6.8e-41 172.2 226 46.5
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 6.8e-41 172.2 161 57.8
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 2.0e-40 170.6 136 62.5
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 2.6e-40 170.2 279 41.2
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 9.8e-40 168.3 348 37.1
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 9.8e-40 168.3 259 44.0
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 1.7e-39 167.5 278 41.0
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 2.2e-39 167.2 281 40.2
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 2.8e-39 166.8 342 38.0
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 4.8e-39 166.0 273 41.0
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 1.6e-37 161.0 217 48.4
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 1.0e-36 158.3 269 43.1
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 2.3e-36 157.1 128 60.2
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 2.9e-36 156.8 141 57.4
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 4.2e-35 152.9 334 39.8
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 1.6e-34 151.0 210 41.4
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 1.6e-34 151.0 337 33.8
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 3.6e-34 149.8 109 63.3
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 3.4e-32 143.3 340 35.0
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 1.7e-31 141.0 294 36.1
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 1.4e-30 137.9 238 37.4
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 9.2e-30 135.2 247 37.7
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 2.3e-28 130.6 343 34.7
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 1.9e-27 127.5 276 33.0
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 1.6e-26 124.4 171 39.8
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 2.0e-24 117.5 227 34.4
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 1.4e-22 111.3 158 39.9
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 3.2e-22 110.2 166 40.4
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 2.0e-21 107.5 80 56.2
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 6.6e-20 102.4 326 26.1
ECA232G2176 Erigeron canadensis HOM05D006487 ORTHO05D007982 4.3e-19 99.8 273 34.1
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 4.7e-18 96.3 136 44.9
BcaC05g27591 Brassica carinata HOM05D006487 ORTHO05D007982 2.1e-10 70.9 116 40.5
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 3.6e-10 70.1 36 83.3
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.8e-09 67.8 36 75.0
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 4.0e-09 66.6 35 77.1
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 5.2e-09 66.2 62 46.8
BcaC05g27879 Brassica carinata HOM05D024450 ORTHO05D007982 7.5e-08 62.4 82 46.3
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 1.7e-07 61.2 59 49.2
Atru.chr9.83 Acer truncatum HOM05D006487 ORTHO05D007982 3.2e-06 57.0 65 56.9


User provided reference genes

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