Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 0.0e+00 1193.3 862 100.0
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.5e-254 881.7 839 77.5
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 8.0e-251 870.9 862 81.6
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 4.9e-232 808.5 876 78.2
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.7e-216 756.9 849 72.3
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 3.5e-214 749.2 851 69.6
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 7.1e-207 724.9 866 72.5
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 8.1e-203 711.4 864 72.8
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.7e-200 703.7 850 70.7
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 5.1e-197 692.2 866 70.2
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 6.7e-197 691.8 855 65.4
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.1e-195 686.8 838 72.0
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 3.8e-192 676.0 872 70.2
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.2e-191 672.9 850 68.9
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 5.5e-191 672.2 850 68.8
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.0e-189 666.4 845 69.6
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.4e-188 661.8 856 58.5
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.0e-186 656.0 854 70.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.2e-185 654.4 867 70.0
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 2.2e-184 650.2 724 73.9
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 6.0e-182 642.1 836 69.3
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 3.3e-180 636.3 756 75.1
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 9.7e-180 634.8 931 62.5
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.1e-178 629.8 869 64.6
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.0e-177 627.1 866 64.5
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.2e-174 617.8 838 70.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.6e-174 617.5 741 76.9
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.6e-174 617.5 856 68.6
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 7.9e-174 615.1 860 69.7
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.7e-173 611.7 866 66.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 7.4e-172 608.6 847 68.1
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.3e-171 607.8 704 76.8
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.3e-171 607.8 770 63.4
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 2.2e-171 607.1 896 67.7
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.8e-171 606.7 751 72.2
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 4.8e-171 605.9 841 70.5
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.1e-170 604.7 844 69.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.4e-170 604.4 857 66.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.5e-169 600.9 859 67.2
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.5e-169 600.9 851 67.3
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 5.9e-169 599.0 643 84.0
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 7.7e-169 598.6 855 65.5
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.3e-168 597.8 842 66.2
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 8.5e-168 595.1 858 67.7
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 8.5e-168 595.1 868 63.9
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 4.2e-167 592.8 759 65.9
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.2e-167 592.8 869 64.3
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 9.4e-167 591.7 866 64.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.6e-166 590.9 783 71.9
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.6e-166 589.7 743 73.8
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.0e-165 588.2 863 68.3
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.0e-165 588.2 783 71.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 3.3e-164 583.2 770 71.0
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 4.4e-164 582.8 743 70.7
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 2.8e-163 580.1 747 73.8
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.8e-163 580.1 918 53.8
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 6.3e-163 578.9 751 71.2
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.4e-162 577.8 839 60.7
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 6.9e-162 575.5 686 78.1
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 3.8e-160 569.7 757 69.7
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.9e-159 567.4 754 68.3
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 2.5e-159 567.0 743 72.5
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 4.2e-159 566.2 839 66.9
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 5.5e-159 565.8 850 63.4
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.6e-158 564.3 781 70.4
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 3.9e-157 559.7 850 66.1
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 5.2e-157 559.3 866 57.4
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 8.8e-157 558.5 748 69.1
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.5e-156 557.8 857 58.9
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.1e-154 550.1 742 71.8
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 7.0e-154 548.9 759 67.5
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.3e-152 544.7 844 64.2
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 5.0e-152 542.7 734 69.1
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.1e-151 541.6 679 76.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.5e-151 541.2 723 68.3
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 3.2e-151 540.0 640 75.9
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 4.2e-151 539.7 696 72.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.2e-151 539.7 643 78.7
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.2e-151 539.7 830 63.0
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.2e-150 538.1 774 71.1
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.6e-150 537.7 679 73.9
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 3.6e-150 536.6 740 66.9
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.2e-148 531.6 847 63.6
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.5e-148 531.2 844 62.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.3e-148 530.0 722 70.4
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 9.7e-148 528.5 745 69.0
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.7e-147 527.7 739 70.6
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 7.0e-146 522.3 870 63.2
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-145 521.2 841 62.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.7e-145 520.4 843 63.3
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 4.5e-145 519.6 838 63.4
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 4.5e-145 519.6 838 63.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 5.9e-145 519.2 852 59.5
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.0e-144 518.5 684 63.2
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.3e-144 518.1 854 61.7
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.9e-144 516.9 849 55.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.9e-144 516.9 854 61.2
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.1e-143 515.0 642 68.8
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 7.2e-143 512.3 722 66.3
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 9.4e-143 511.9 868 61.3
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 2.1e-142 510.8 854 61.0
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.7e-142 510.4 758 67.0
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 3.6e-142 510.0 758 66.9
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 8.0e-142 508.8 638 76.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 8.0e-142 508.8 856 58.8
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.4e-141 508.1 740 68.1
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.8e-141 507.7 726 64.9
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 6.8e-141 505.8 764 66.2
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-140 504.6 759 66.7
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.6e-140 503.8 762 56.8
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 3.4e-140 503.4 844 62.6
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.7e-139 501.1 840 57.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 4.8e-139 499.6 724 65.9
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.1e-138 498.4 803 62.3
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 4.1e-138 496.5 842 62.4
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 4.1e-138 496.5 745 65.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.6e-137 494.6 850 61.2
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 2.9e-136 490.3 843 61.1
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.6e-134 484.6 649 73.2
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.4e-133 481.5 738 62.6
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.2e-132 478.4 724 67.0
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.2e-131 474.2 615 74.3
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 2.4e-130 470.7 644 72.4
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-129 468.4 725 59.2
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.1e-127 461.8 725 58.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.1e-127 461.8 725 58.6
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.0e-124 451.1 714 59.2
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 4.4e-124 449.9 633 65.6
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 4.9e-123 446.4 874 51.1
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.2e-121 441.8 672 61.6
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 4.7e-118 429.9 777 59.6
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.2e-116 425.2 715 62.5
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-113 414.8 749 55.8
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 7.3e-111 406.0 768 56.4
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 6.2e-110 402.9 695 62.7
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-108 398.7 725 56.1
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 5.8e-108 396.4 644 68.0
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.7e-107 393.7 743 55.5
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 8.3e-107 392.5 743 55.0
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 7.8e-105 386.0 749 54.3
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.8e-105 386.0 647 56.1
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.0e-104 384.0 657 57.8
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.1e-103 382.1 570 65.1
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.5e-103 381.7 635 60.9
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.6e-102 378.3 534 65.9
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.8e-102 377.5 395 64.1
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.2e-98 364.0 662 60.9
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.2e-97 362.1 644 45.0
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.5e-95 354.4 514 80.2
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.7e-94 350.1 711 47.4
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.2e-92 345.5 526 45.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.7e-88 331.6 656 57.5
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-85 322.0 514 64.6
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.5e-84 317.0 733 47.5
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 8.4e-83 312.8 630 59.7
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 4.0e-77 293.9 533 42.4
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.1e-72 276.9 576 55.9
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 9.6e-71 272.7 479 79.5
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 6.3e-62 243.4 311 79.4
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-56 225.7 302 49.3
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.0e-52 211.8 474 74.7
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.1e-50 206.1 472 57.6
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.1e-48 197.2 291 46.4
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 5.1e-48 197.2 727 30.3
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.0e-47 195.3 331 42.0
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 4.7e-41 174.1 125 73.6
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 4.2e-34 151.0 124 64.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.0e-31 142.1 88 80.7
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 4.8e-30 137.5 100 76.0
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.5e-18 98.6 60 81.7
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 3.6e-17 94.7 58 79.3
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.6e-15 88.6 66 69.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.8e-14 85.1 239 76.2
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 7.8e-12 77.0 59 61.0
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 8.9e-08 63.5 60 60.0
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 3.4e-07 61.6 209 25.4


User provided reference genes

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