Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 6.1e-121 437.6 233 100.0
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 1.3e-91 340.1 237 78.9
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 1.4e-85 320.1 287 65.2
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 9.5e-82 307.4 248 71.4
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 1.7e-75 286.6 241 65.6
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 1.1e-74 283.9 235 67.7
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 7.3e-74 281.2 225 68.4
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 1.6e-73 280.0 235 67.2
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 6.2e-73 278.1 227 65.2
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 2.4e-72 276.2 233 66.1
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 5.2e-72 275.0 237 66.7
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 8.9e-72 274.2 243 64.6
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 1.2e-71 273.9 236 64.8
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 1.5e-71 273.5 237 65.4
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 1.3e-70 270.4 236 64.8
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.8e-70 268.9 237 64.1
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.8e-70 268.9 237 64.6
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 8.4e-70 267.7 234 64.1
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 1.4e-69 266.9 244 62.7
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 2.4e-69 266.2 237 63.7
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 3.2e-69 265.8 235 65.1
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 7.1e-69 264.6 239 62.8
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 1.2e-68 263.8 221 66.5
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 1.2e-68 263.8 243 62.1
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 1.2e-68 263.8 231 63.2
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 1.6e-68 263.5 204 69.6
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 2.1e-68 263.1 221 64.7
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 3.5e-68 262.3 217 67.3
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 4.6e-68 261.9 235 63.8
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 7.8e-68 261.2 208 68.3
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 3.0e-67 259.2 236 63.1
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 5.1e-67 258.5 242 61.6
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 5.1e-67 258.5 195 69.2
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 3.3e-66 255.8 217 65.9
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 7.3e-66 254.6 194 69.6
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 7.3e-66 254.6 204 68.6
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 1.3e-65 253.8 217 65.0
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 1.3e-65 253.8 208 68.8
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 4.8e-65 251.9 221 63.3
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 6.2e-65 251.5 208 68.8
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 1.1e-64 250.8 203 67.5
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 2.4e-64 249.6 235 63.0
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 3.1e-64 249.2 219 64.4
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 5.3e-64 248.4 215 63.3
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 9.0e-64 247.7 207 68.6
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 1.2e-63 247.3 206 65.5
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 2.6e-63 246.1 209 63.2
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 5.8e-63 245.0 240 59.6
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 5.8e-63 245.0 183 71.0
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 1.3e-62 243.8 233 60.5
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 1.3e-62 243.8 231 61.0
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 4.2e-61 238.8 175 72.6
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 7.1e-61 238.0 212 62.3
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.2e-60 237.3 206 64.6
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 1.2e-60 237.3 205 62.9
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 4.6e-60 235.3 245 59.2
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 6.0e-60 235.0 173 72.8
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 7.9e-60 234.6 216 59.7
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 7.9e-60 234.6 216 59.7
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 7.9e-60 234.6 216 59.7
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 1.0e-59 234.2 207 61.8
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.0e-59 234.2 245 57.1
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 1.0e-59 234.2 220 61.4
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 1.3e-59 233.8 204 63.7
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 1.1e-58 230.7 211 58.8
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 1.5e-58 230.3 172 72.1
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 2.5e-58 229.6 235 57.9
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 4.3e-58 228.8 211 61.1
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 4.3e-58 228.8 241 56.8
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 4.3e-58 228.8 205 61.5
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 1.4e-56 223.8 225 56.4
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 2.4e-56 223.0 220 57.7
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 3.1e-56 222.6 205 61.0
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 5.3e-56 221.9 216 57.4
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 5.3e-56 221.9 239 54.8
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 6.9e-56 221.5 221 58.4
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 2.6e-55 219.5 205 63.4
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 1.3e-54 217.2 173 67.6
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 4.9e-54 215.3 192 62.5
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 1.4e-53 213.8 206 58.3
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 4.2e-53 212.2 201 59.7
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 5.5e-53 211.8 232 53.4
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 5.5e-53 211.8 194 60.3
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 1.1e-48 197.6 179 62.0
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 1.8e-48 196.8 246 50.0
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 5.8e-47 191.8 162 66.0
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 1.2e-44 184.1 169 60.4
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 2.5e-42 176.4 171 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 3.3e-42 176.0 151 58.9
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 5.7e-42 175.3 134 70.9
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 2.2e-41 173.3 237 48.1
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 4.1e-40 169.1 235 48.5
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 1.0e-38 164.5 169 50.9
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 1.1e-37 161.0 235 43.4
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 2.7e-36 156.4 170 50.0
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 3.7e-33 146.0 329 36.8
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 5.5e-29 132.1 104 70.2
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 5.5e-29 132.1 104 70.2
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 2.6e-26 123.2 103 67.0
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 3.3e-26 122.9 140 45.0
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 2.0e-18 97.1 176 36.4
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 9.7e-18 94.7 62 82.3
Glyma.04G055801 Glycine max HOM05D007323 ORTHO05D009238 2.3e-11 73.6 131 38.9
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 3.0e-11 73.2 144 36.1
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 3.0e-11 73.2 67 56.7
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 1.6e-07 60.8 78 51.3


User provided reference genes

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